Job Description P39336 Confidence 14.16% Date Thu Jan 5 11:59:27 GMT 2012 Rank 13 Aligned Residues 33 % Identity 39% Template c2xi1A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:nef; PDBTitle: crystal structure of the hiv-1 nef sequenced from a patient's sample Resolution 3.50 Å

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		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.										.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.
Query Sequence		M	P	H	V	C	D	E	S	I	S	Y	L	L	G	E	K	G	I	L	E	.	.	.	.	.	.	.	.	.	E	I	D	K	L	Y	A	L	N	D	H	G	I
Query Conservation																						.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	T	Y	K	G	A	V	D	L	S	F	F	L	K	E	K	G	G	L	E	G	L	V	Y	S	Q	R	E	K	E	I	L	D	L	W	V	Y	H	T	Q	G	Y
Template Known Secondary structure																	T	S	T	T	T	T		B																			B
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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