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Job DescriptionP80668
Confidence100.00%DateThu Jan 5 12:33:16 GMT 2012
Rank36Aligned Residues449
% Identity31%Templatec3pqaA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:lactaldehyde dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase gapn2 from methanocaldococcus jannaschii dsm 2661
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60.........70.........80.........90.........100.........110..
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Query Sequence  SEKRLAIFDPATGQEIASTADANEADVDNAVMSAWRAFVSRRWAGRLPAERERILLRFADLVEQHSEELAQLETLEQGKS
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Template Sequence  NREDMDVINPYSLEVIKKIPALSREEAKEAIDTAEKYK. . EVMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKP
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TTT





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   10.........20.........30.........40....... ..50.........60.........70.........80.......
 
   113......120.........130.........140.........150.........160.........170.........180.........190..
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Query Sequence  IAISRAFEVGCTLNWMRYTAGLTTKIAGKTLDLSIPLPQGARYQAWTRKEPVGVVAGIVPWNFPLMIGMWKVMPALAAGC
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Template Sequence  IKQARV. EVERSIGTFKLAAFYVKEHRDEVIPSDDR. . . . . . . LIFTRREPVGIVGAITPFNFPLNLSAHKIAPAIATGN
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   88.90... ......100.........110.........120.. .......130.........140.........150.........
 
   193......200.........210...... ...220.........230.........240.........250.........260........
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Query Sequence  SIVIKPSETTPLTMLRVAELASEA. . . . GIPDGVFNVVTGSGAVCGAALTSHPHVAKISFTGSTATGKGIARTAADHLTR
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Template Sequence  VIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITKK. . AGFKK
Template Known Secondary structure 
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GGG

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   160.........170.........180.........190.........200.........210.........220.........230.. .....
 
   269270.........280.........290.........300.........310.........320.........330.........340........
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Query Sequence  VTLELGGKNPAIVLKDADPQWVIEGLMTGSFLNQGQVCAASSRIYIEAPLFDTLVSGFEQAVKSLQVGPGMSPVAQINPL
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Template Sequence  IALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIADKFIEMFVNKAKVLNVGNPLDEKTDVGPL
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TTS
GGGG
STTSGGGT

BS
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   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   349350.........360.........370.........380.........390.........400.........410.........420........
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Query Sequence  VSRAHCDKVCSFLDDAQAQQAELIRGSNGPAGEGYYVAPTLVVNPDAKLRLTREEVFGPVVNLVRVADGEEALQLANDTE
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Template Sequence  ISVEHAEWVEKVVEKAIDEGGKLLLGGKR. . . DKALFYPTIL. EVDRDNILCKTETFAPVIPIIRTNE. EEMIDIANSTE
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...TT

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TTSGGGT



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   318.320.........330.........340...... ...350...... ...360.........370.........380. ........390..
 
   429430.........440.........450.........460.... .....470.........480.........490........
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Query Sequence  YGLTASVWTQNLSQALEYSDRLQAGTVWVNSHTLID. ANLPFGGMKQSGTGRDFGPDWLDGWCETKSVCVR
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Template Sequence  YGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLGREGVKYAMEEMSNIKTIIIS
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S
S
S
SSSS
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TTS
B

SGGGS
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   393......400.........410.........420.........430.........440.........450.........460...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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