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Job DescriptionP80668
Confidence100.00%DateThu Jan 5 12:33:16 GMT 2012
Rank40Aligned Residues428
% Identity28%Templatec3lnsD_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:benzaldehyde dehydrogenase; PDBTitle: benzaldehyde dehydrogenase, a class 3 aldehyde dehydrogenase, with2 bound nadp+ and benzoate adduct
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   53......60.........70.........80.........90.........100.........110.........120.........130..
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Query Sequence  DANEADVDNAVMSAWRAFVSRRWAGRLPAERERILLRFADLVEQHSEELAQLETLEQGKSIAISRAFEVGCTLNWMRYTA
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Template Sequence  YLSPAKIDSLFSAQKAYF. . ATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVVDLAEIGAVLHEIDFAL
Template Known Secondary structure 


..TTTT
STT


T
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   3......10.........20 .........30.........40.........50.........60.........70.........80
 
   133......140.........150.........160.........170.........180.........190.........200.........210..
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Query Sequence  GLTTKIAGKTLDLSIPLPQGARYQAWTRKEPVGVVAGIVPWNFPLMIGMWKVMPALAAGCSIVIKPSETTPLTMLRVAEL
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Template Sequence  AHLDEWVAPVSVPSPDIIA. . PSECYVVQEPYGVTYIIGPFNYPVNLTLTPLIGAIIGGNTCIIKPSETTPETSAVIEKI
Template Known Secondary structure  TS



GGG
..S




SSSTTTT


TT
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   81........90......... 100.........110.........120.........130.........140.........150........
 
   213......220.........230.........240.........250.........260.........270.........280.........290..
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Query Sequence  ASEAGIPDGVFNVVTGSGAVCGAALTSHPHVAKISFTGSTATGKGIARTAADHLTRVTLELGGKNPAIVLKDADPQWVIE
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Template Sequence  IAEAFAPEYVAVIQGG. . RDENSHLLSLP. FDFIFFTGSPNVGKVVMQAAAKHLTPVVLELGGKCPLIVLPDADLDQTVN
Template Known Secondary structure 

TTT



..TS
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SS
TTT






TT

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   159160.........170.... .....180..... ....190.........200.........210.........220.........230.....
 
   293......300.........310.........320.........330.........340.........350.........360.........370..
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Query Sequence  GLMTGSFLNQGQVCAASSRIYIEAPLFDTLVSGFEQAVKSLQVGPGMSPVAQINPLVSRAHCDKVCSFLDDAQAQQAELI
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Template Sequence  QLMFGKFINSGQ. TIAPDYLYVHYSVKDALLERLVERVKTE. . . . . LPEINSTGKLVTERQVQRLVSLLEAT. . . QGQVL
Template Known Secondary structure  GGGG
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GGG.....

STTTT


SS
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S
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   236...240....... ..250.........260.........270..... ....280.........290.........300. .....
 
   373......380.........390.........400.........410.........420...... ...430.........440.........450.
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Query Sequence  RGSNGPAGEGYYVAPTLVVNPDAKLRLTREEVFGPVVNLVRVADGEEALQLAND. TEYGLTASVWTQNLSQALEYSDRLQ
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Template Sequence  VGSQA. DVSKRALSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPKPLAVYVFGKDMDVAKGIINQIQ
Template Known Secondary structure 


.GGGT

S

TTSGGGSS


SSS
S
S
S
S
TS
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   308.310.. .......320.........330.........340.........350.........360.........370.........380......
 
   452.......460. ........470.........480.........490.......
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Query Sequence  AGTVWVNSHT. . LIDANLPFGGMKQSGTGRDFGPDWLDGWCETKSVCV
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Template Sequence  SGDAQVNGVMLHAFSPYLPFGGIGASGMGEYHGHFSYLTFTHKKSVRI
Template Known Secondary structure 
SS

SGGGG
TTS
B


GGG

BST
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   387..390.........400.........410.........420.........430....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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