Job Description P39384 Confidence 38.45% Date Thu Jan 5 12:00:17 GMT 2012 Rank 57 Aligned Residues 122 % Identity 12% Template c3md9A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:hemin-binding periplasmic protein hmut; PDBTitle: structure of apo form of a periplasmic heme binding protein Resolution 1.50 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		I	P	L	V	G	T	Y	C	T	F	M	P	Q	E	I	P	M	A	A	G	A	V	V	.	.	V	S	L	C	S	T	S	D	E	T	I	E	E	A	E	K	D	L	P	R	N	L	C	P	L	I	K	S	S	Y	G	F	G	K	T	D	K	C	P	Y	F	Y	F	S	D	L	V	V	G	E	T	T	C	D	G
Query Conservation																									.	.
Alig confidence						.	.																		.	.																		.	.	.																		.	.	.	.	.	.
Template Conservation						.	.																																					.	.	.																		.	.	.	.	.	.
Template Sequence		E	R	I	V	.	.	T	I	G	G	D	V	T	E	I	A	Y	A	L	G	A	G	D	E	I	V	A	R	D	S	T	S	Q	Q	P	Q	A	A	Q	K	L	P	.	.	.	D	V	G	Y	M	R	T	L	N	A	E	G	I	L	A	M	K	.	.	.	.	.	.	P	T	M	L	L	V	S	E	L	A	Q	P
Template Known Secondary structure						.	.			S										T	T		G	G	G						T	T				S	G	G	G	G	G	S		.	.	.	B				T	T	S								T	T		.	.	.	.	.	.		S						T	T		S
Template Predicted Secondary structure						.	.																																					.	.	.																		.	.	.	.	.	.
Template SS confidence
		27	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.							.	.	.	.	.	.	90	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	K	M	Y	E	Y	M	A	E	F	K	P	V	H	V	M	Q	L	P	N	S	V	K	D	D	A	S	R	A	L	W	K	A	E	M	L	R	L	Q	K	T	V	E	E	R	F	G	H	E	I	S	E	D	A	L	R	D	A	I	A	L	K	N	R	E	R	R
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		S	L	V	L	T	Q	I	A	S	S	G	V	N	V	V	T	V	P	G	Q	T	T	.	.	.	.	.	.	.	.	.	.	P	E	S	V	A	M	K	I	N	A	V	A	T	A	L	H	Q	T	.	.	.	E	K	G	Q	K	L	I	E	D	Y	Q	Q	R	L	A
Template Known Secondary structure											T	T											S	.	.	.	.	.	.	.	.	.	.																T			.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.											.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions