Job Description P39384 Confidence 42.85% Date Thu Jan 5 12:00:17 GMT 2012 Rank 51 Aligned Residues 128 % Identity 16% Template c3gfvA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized abc transporter solute-binding PDBTitle: crystal structure of petrobactin-binding protein yclq from2 bacillu subtilis Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																		.
Query SS confidence																									.	.																		.
Query Sequence		I	P	L	V	G	T	Y	C	T	F	M	P	Q	E	I	P	M	A	A	G	A	V	V	.	.	V	S	L	C	S	T	S	D	E	T	I	E	E	A	E	K	D	.	L	P	R	N	L	C	P	L	I	K	S	S	Y	G	F	G	K	T	D	K	C	P	Y	F	Y	F	S	D	L	V	V	G	E	T	T	C	D
Query Conservation																									.	.																		.
Alig confidence						.	.																		.	.																		.																					.	.	.	.	.	.								.	.	.
Template Conservation						.	.																																																										.	.	.	.	.	.								.	.	.
Template Sequence		K	K	V	V	.	.	V	F	D	F	G	S	L	D	T	L	D	K	L	G	L	D	D	I	V	A	G	L	P	K	Q	V	L	P	K	Y	L	S	K	F	K	D	D	K	Y	A	D	V	G	S	L	K	E	P	D	F	D	K	V	A	E	L	D	.	.	.	.	.	.	P	D	L	I	I	I	S	.	.	.	A
Template Known Secondary structure		S				.	.													T	T		G	G	G							S	S			G	G	G	G	G	G	G	S	T	T	S				B		S	S	S	B								T		.	.	.	.	.	.		S						.	.	.	G
Template Predicted Secondary structure						.	.																																																										.	.	.	.	.	.								.	.	.
Template SS confidence
		35	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.							.	.	.	.	100	.	.				.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	K	K	M	Y	E	Y	M	A	E	F	K	P	V	H	V	M	Q	L	P	N	S	V	K	D	D	A	S	R	A	L	W	K	A	E	M	L	R	L	Q	K	T	V	E	E	R	F	G	H	E	I	S	E	D	A	L	R	D	A	I	A	L	K	N	R	E	R	R	A	L	A	N
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																											.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		R	Q	S	E	S	Y	K	E	F	S	K	I	A	P	T	I	Y	L	G	V	D	T	A	K	Y	.	.	.	.	.	.	.	.	X	E	S	F	K	S	D	A	E	T	I	G	K	I	F	D	K	E	.	.	.	D	K	V	K	D	E	L	A	N	I	D	H	S	I	A	D	V	K	K
Template Known Secondary structure		G	G	G	G	G								S									G	G	G		.	.	.	.	.	.	.	.															T	T			.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.									.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions