Job Description P39384 Confidence 73.74% Date Thu Jan 5 12:00:17 GMT 2012 Rank 18 Aligned Residues 139 % Identity 13% Template c2r79A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein from2 pseudomonas aeruginosa Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	L	V	G	T	Y	C	T	F	M	P	Q	E	I	P	M	A	A	G	A	V	V	V	S	L	C	S	T	S	D	E	T	I	E	E	A	E	K	D	L	P	R	N	L	C	P	L	I	K	S	S	Y	G	F	G	K	T	D	K	C	P	Y	F	Y	F	S	D	L	V	V	G	E	T	T	C	D	G	K	K
Query Conservation
Alig confidence												.	.												.																																					.	.	.	.	.	.
Template Conservation												.	.												.																																					.	.	.	.	.	.
Template Sequence		Q	R	W	V	S	A	G	G	S	L	.	.	S	E	W	V	V	A	L	G	G	E	S	.	K	L	V	G	V	D	T	T	S	Q	H	P	Q	A	L	K	Q	L	P	S	V	G	Y	Q	R	Q	L	A	A	E	G	V	L	A	L	R	.	.	.	.	.	.	P	D	I	L	I	G	T	E	E	M	G	P	P	P
Template Known Secondary structure			S					S				.	.							T	T		G	G	.	G						T	T				S	G	G	G	G	G	S		B				G	G	G								T	T		.	.	.	.	.	.		S						T	T
Template Predicted Secondary structure												.	.												.																																					.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.							.	.	.	.	.	90	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	Y	E	Y	M	A	E	F	K	P	V	H	V	M	Q	L	P	N	S	V	K	D	D	A	S	R	A	L	W	K	A	E	M	L	R	L	Q	K	T	V	E	E	R	F	G	H	E	I	S	E	D	A	L	R	D	A	I	A	L	K	N	R	E	R	R	A	L	A	N	F	Y	H	L	G	Q	L	N	P	P
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		V	L	K	Q	L	E	G	A	G	V	R	V	E	T	L	S	A	K	P	D	.	.	.	.	.	.	.	.	.	.	L	E	A	L	E	S	N	L	K	K	L	G	D	W	L	G	V	P	.	.	.	Q	R	A	E	A	A	E	L	D	Y	R	Q	R	L	R	R	Q	A	D	W	I	A	A	A	Q	K	S	Q	P
Template Known Secondary structure									T	T										S	S	.	.	.	.	.	.	.	.	.	.																T			.	.	.																									T	T	T	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.											.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		193
Predicted Secondary structure
Query SS confidence
Query Sequence		A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		166

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions