Job Description P39384 Confidence 21.76% Date Thu Jan 5 12:00:17 GMT 2012 Rank 121 Aligned Residues 122 % Identity 15% Template c2o1eB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ycdh; PDBTitle: crystal structure of the metal-dependent lipoprotein ycdh2 from bacillus subtilis, northeast structural genomics3 target sr583 Resolution 2.60 Å

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		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	I	N	E	L	D	A	M	T	A	R	V	R	Q	Q	W	E	E	G	Q	R	L	D	P	R	P	R	I	L	I	T	G	C	P	I	G	G	A	A	E	K	V	V	R	A	I	E	E	N	G	G	W	V	V	G	Y	E	N	C	T	G	A	K	A	T	E	Q	C	V	A	E	T	G	D	V	Y	D	A
Query Conservation
Alig confidence																									.	.	.	.	.													.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.													.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	Y	I	A	K	L	Q	D	L	D	K	L	Y	R	T	T	A	K	K	A	E	K	.	.	.	.	.	K	E	F	I	T	Q	H	T	A	F	G	Y	.	.	.	.	.	.	L	A	K	E	Y	G	L	K	Q	V	P	I	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																							S	S	.	.	.	.	.						S	S						.	.	.	.	.	.					T	T							S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.													.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.						.	.	.	.	190	.	.	.	.	.	.	.							.	.	200	.	.	.	.	.	.	.	.	.	210	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	D	K	Y	L	A	I	G	C	S	C	V	S	P	N	D	Q	R	L	K	M	L	S	Q	M	V	E	E	Y	Q	V	D	G	V	V	D	V	I	L	Q	A	C	H	T	Y	A	V	E	S	L	A	I	K	R	H	V	R	Q	Q	H	N	I	P	Y	I	A	I	E	T	D	Y	S	T	S	D	V	G	Q	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.																								.	.
Template Conservation		.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.																								.	.
Template Sequence		.	.	.	.	.	.	.	.	L	S	P	D	Q	E	P	S	A	A	S	L	A	K	L	K	T	Y	A	K	E	H	N	V	K	V	I	Y	F	.	.	.	.	.	.	.	.	E	E	I	A	S	S	K	V	A	D	T	L	A	S	E	I	G	A	K	T	E	V	L	.	.	N	T	L	E	G	L	S	K	E	E
Template Known Secondary structure		.	.	.	.	.	.	.	.			S	S	S												T					T	T							.	.	.	.	.	.	.	.	S	S														T								.	.			S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.																								.	.
Template SS confidence
										212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240									.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.
		373	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	R	V	A	A	F	I	E	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	D	K	G	L	G	Y	I	D	I	X
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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