Job Description P0AFU2 Confidence 1.58% Date Thu Jan 5 11:27:16 GMT 2012 Rank 73 Aligned Residues 100 % Identity 19% Template d1oede_ SCOP info Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Neurotransmitter-gated ion-channel transmembrane pore Resolution 4.0

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		8	.	10	.	.	.	.	.	.	.	.	.	20						.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure															.	.	.	.	.
Query SS confidence															.	.	.	.	.
Query Sequence		V	L	S	L	L	A	V	A	I	V	L	F	A	.	.	.	.	.	T	G	R	V	R	M	D	A	V	A	L	F	V	I	V	A	F	A	L	S	G	T	L	T	V	P	E	V	F	S	G	F	S	D	P	N	V	V	L	I	A	A	L	F	I	I	G	D	G	L	V	R	T	G	V	A	T	V	M	G	T	W
Query Conservation															.	.	.	.	.
Alig confidence															.	.	.	.	.
Template Conservation
Template Sequence		V	L	I	S	S	L	V	V	L	V	Y	F	L	P	A	Q	A	G	G	Q	K	C	T	L	S	I	S	V	L	L	A	Q	T	I	F	L	F	L	I	A	Q	K	V	P	E	T	S	L	N	V	P	L	I	G	K	Y	L	I	F	V	M	F	V	S	M	L	I	V	M	N	C	V	I	V	L	N	V	S	L	R
Template Known Secondary structure																	T			T	T																														S					S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	K	V	A	G	N	S	E	I	K	M	L	V	L	L	M	L	T	V	A	G	L	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	K	V	I	D	K	A	C	F	W	I	A	L	L	L	F	S	I	G	T	L	A	I	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions