Job Description P33363 Confidence 100.00% Date Thu Jan 5 11:52:06 GMT 2012 Rank 8 Aligned Residues 356 % Identity 32% Template d1x38a1 SCOP info TIM beta/alpha-barrel (Trans)glycosidases NagZ-like Resolution 1.70

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.													.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	F	G	N	H	P	L	T	P	E	A	R	D	A	F	V	T	E	L	L	K	K	M	T	V	D	E	K	I	G	Q	L	R	L	I	S	V	G	P	D	N	P	K	E	A	I	R	E	M	I	K	D	G	Q	V	G	A	I	F	N	T	V	T	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	D	I
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																												.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.																												.	.	.	.	.
Template Sequence		V	L	Y	K	D	A	T	K	P	V	E	D	R	.	.	.	V	A	D	L	L	G	R	M	T	L	A	E	K	I	G	Q	M	T	Q	I	E	R	L	V	A	T	P	.	.	.	.	.	D	V	L	R	D	N	F	I	G	S	L	L	S	G	G	G	S	V	P	R	K	G	A	T	A	K	E	W	Q	D	M	V
Template Known Secondary structure			G	G	G		T	T	S						.	.	.						T	T										T					G	G	G				.	.	.	.	.						T	T								T	T			S	S	T	T
Template Predicted Secondary structure															.	.	.																												.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.				.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		R	A	M	Q	D	Q	V	M	E	L	S	R	L	K	I	P	L	F	F	A	Y	D	V	L	H	G	Q	.	.	.	.	.	R	T	V	F	P	I	S	L	G	L	A	S	S	F	N	L	D	A	V	K	T	V	G	R	V	S	A	Y	E	A	A	D	D	G	L	N	M	T	W	A	P	M	V	D	V	S	R	D
Query Conservation																													.	.	.	.	.
Alig confidence									.																				.	.	.	.	.
Template Conservation									.
Template Sequence		D	G	F	Q	K	A	C	.	M	S	T	R	L	G	I	P	M	I	Y	G	I	D	A	V	H	G	Q	N	N	V	Y	G	A	T	I	F	P	H	N	V	G	L	G	A	T	R	D	P	Y	L	V	K	R	I	G	E	A	T	A	L	E	V	R	A	T	G	I	Q	Y	A	F	A	P	C	I	A	V	C	R	D
Template Known Secondary structure									.		T	S	S	S											S	S	S	S	T	T	S	T	T														T																			T	T								B					S
Template Predicted Secondary structure									.
Template SS confidence
		75	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.											.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	W	G	R	A	S	E	G	F	G	E	D	T	Y	L	T	S	T	M	G	K	T	M	V	E	A	M	Q	G	K	S	P	A	.	.	.	.	.	.	.	.	.	.	D	R	Y	S	V	M	T	S	V	K	H	F	A	A	Y	G	A	V	E	G	G	K	E	Y	N	T	V	D	M	S	P	Q	R	L	F	N
Query Conservation																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																							.													.	.	.	.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		P	R	W	G	R	C	Y	E	S	Y	S	E	D	R	R	I	V	Q	S	M	T	.	E	L	I	P	G	L	Q	G	D	V	P	K	D	F	T	S	G	M	P	F	V	A	G	K	N	K	V	A	A	C	A	K	H	F	V	G	D	G	G	T	V	D	G	I	N	E	N	N	T	I	I	N	R	E	G	L	M	N
Template Known Secondary structure		T	T	S	T	T	G	G	G	S	S		S	S							G	G	.	G											T	T			T	T						S	T	T	S		B							T	T	G	G	G		G	G	G		T	T
Template Predicted Secondary structure																							.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	M	P	P	Y	K	A	G	L	D	A	G	S	G	A	V	M	V	A	L	N	S	L	N	G	T	P	A	T	S	D	S	W	L	L	K	D	V	L	R	D	Q	W	G	F	K	G	I	T	V	S	D	H	G	A	I	K	E	L	I	K	H	G	T	A	A	D	P	E	D	A	V	R	V	A	L	K	S	G
Query Conservation
Alig confidence																																																														.
Template Conservation																																																														.
Template Sequence		I	H	M	P	A	Y	K	N	A	M	D	K	G	V	S	T	V	M	I	S	Y	S	S	W	N	G	V	K	M	H	A	N	Q	D	L	V	T	G	Y	L	K	D	T	L	K	F	K	G	F	V	I	S	D	W	E	G	I	D	R	I	.	T	T	P	A	G	S	D	Y	S	Y	S	V	K	A	S	I	L	A	G
Template Known Secondary structure			T	S									T	T								S	S			T	T			G	G	G											T	T	S				S						T	T	T	T	G	G	G	.	S	S	S	T	T	T	T												T
Template Predicted Secondary structure																																																														.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		315	.	.	.	.	320	.	.				.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		I	N	M	S	M	S	D	E	.	.	.	Y	Y	S	K	Y	L	P	G	L	I	K	S	G	K	V	T	M	A	E	L	D	D	A	A	R	H	V	L	N	V	K	Y	D	M	G	L	F	N	D	P	Y	S	H	L	G	P	K	E	S	D	P	V	D	T	N	A	E	S	R	L	H	R	K	E	A	R	E	V	A
Query Conservation										.	.	.
Alig confidence										.	.	.																																												.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.
Template Sequence		L	D	M	I	M	V	P	N	K	Y	Q	Q	F	I	S	I	L	T	G	H	V	N	G	G	V	I	P	M	S	R	I	D	D	A	V	T	R	I	L	R	V	K	F	T	M	G	L	F	E	N	P	Y	A	D	.	.	.	.	.	.	P	A	M	A	E	Q	L	G	K	Q	E	H	R	D	L	A	R	E	A	A
Template Known Secondary structure				B					S															T	T	S	S																			T	T	T	T	T			S			.	.	.	.	.	.	G	G	G	G	G	G	T	T
Template Predicted Secondary structure																																																								.	.	.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.							.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		392	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	K	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		386	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions