Job Description P33363 Confidence 74.61% Date Thu Jan 5 11:52:06 GMT 2012 Rank 50 Aligned Residues 141 % Identity 13% Template c3hs0B_ PDB info PDB header:immune system Chain: B: PDB Molecule:cobra venom factor; PDBTitle: cobra venom factor (cvf) in complex with human factor b Resolution 3.00 Å

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		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.											.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	V	G	Q	I	P	V	Y	Y	S	H	L	N	T	G	R	P	Y	N	A	D	K	P	N	K	Y	T	S	R	Y	F	.	.	.	.	.	.	.	.	.	.	D	E	A	N	G	A	L	Y	P	F	G	Y	G	L	S	Y	T	T	F	T	V	S	D	V	K	L	S	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	S	D	I	I	S	R	S	D	F	P	K	S	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	W	L	T	K	D	L	T	E	E	P	N	S	Q	G	I	S	S	K	T	M	S	F	Y	L	R	D	S	I	T	T	W	V	V	L	A	V	S	F	T	P	T	K	G	I	C	V	A	E	P	Y	E
Template Known Secondary structure			G	G	G				B					S	S			.	.	.	.	.	.	.	.	.	.	.	.	.								S				T	T	S												S			S											T	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.														.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.
															660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	T	M	K	R	D	G	K	V	T	A	S	V	Q	V	T	N	T	G	K	R	E	G	A	T	V	V	Q	M	Y	L	Q	D	V	T	A	S	M	S	R	P	V	K	Q	L	K	G	F	E	K	I	T	L	K	P	G	E	T	Q	T	V	S	F	P	I	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.
Template Conservation																																																														.	.
Template Sequence		I	R	V	M	K	V	F	F	I	D	L	Q	M	P	Y	S	V	V	K	N	E	Q	V	E	I	R	A	I	L	H	N	Y	V	N	E	D	I	Y	V	R	V	E	L	L	Y	N	P	A	F	C	S	A	S	T	K	G	Q	R	Y	R	.	.	Q	Q	F	P	I	K	A	L	S	S	R	A	V	P	F	V	I	V
Template Known Secondary structure							S									S				T	T													S	S	S												T	T			S	S			S	S	S				.	.							S	S
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		786	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.			.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
		727	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	A	L	K	F	W	N	Q	Q	M	K	Y	D	A	E	P	G	K	F	N	V	F	I	G	T	D	S	A	R	V	K	K	G	E	F	E	L	L
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.
Template Sequence		P	L	E	Q	G	L	H	D	V	E	I	K	A	S	V	Q	E	A	L	W	S	.	.	.	.	.	.	.	.	D	G	V	R	K	K	L	K	V	V
Template Known Secondary structure				S	S												T	T	S	S			.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.
Template SS confidence
		864	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.									.	.	.	.	.	890	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions