Job Description P33363 Confidence 100.00% Date Thu Jan 5 11:52:06 GMT 2012 Rank 2 Aligned Residues 671 % Identity 30% Template c2x41A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose Resolution 2.05 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	T	E	L	L	K	K	M	T	V	D	E	K	I	G	Q	L	R	L	I	S	V	G	P	D	N	P	K	E	A	I	R	E	M	I	K	D	G	Q	V	G	A	I	F	N	T	V	T	R	Q	D	I	R	A	M	Q	D	Q	V	M	E	L	S	R	L	K	I	P	L	F	F	A	Y	D	V	L	H	G	Q
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	N	E	I	L	S	Q	L	T	L	E	E	K	V	K	L	V	V	G	V	G	L	P	G	L	F	G	N	P	H	S	R	V	A	G	A	A	G	E	T	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	P	R	V	G	L	P	A	F	V	L	A	D	G	P	A	G	L
Template Known Secondary structure																			T	B				S	T	T	S	T	T					S	S	T	T		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B	G	G	G	T	B									T	T	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		117															.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	F	P	I	S	L	G	L	A	S	S	F	N	L	D	A	V	K	T	V	G	R	V	S	A	Y	E	A	A	D	D	G	L	N	M	T	W	A	P	M	V	D	V	S	R	D	P	R	W	G	R	A	S	E	G	F	G	E	D	T	Y	L	T	S
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	N	P	T	R	E	N	D	E	N	T	Y	Y	T	T	A	F	P	V	E	I	M	L	A	S	T	W	N	R	E	L	L	E	E	V	G	K	A	M	G	E	E	V	R	E	Y	G	V	D	V	L	L	A	P	A	M	N	I	H	R	N	P	L	C	G	R	N	F	E	Y	Y	S	E	D	P	V	L	S	G
Template Known Secondary structure					S			T	T																			T																				T	T		S						B						S	T	T		T	T	G	G	G	S			S	S
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		T	M	G	K	T	M	V	E	A	M	Q	G	K	S	P	A	D	R	Y	S	V	M	T	S	V	K	H	F	A	A	Y	G	A	V	E	G	G	K	E	Y	N	T	V	D	M	S	P	Q	R	L	F	N	D	Y	M	P	P	Y	K	A	G	L	.	D	A	G	S	G	A	V	M	V	A	L	N	S	L	N	G	T
Query Conservation																																																																.
Alig confidence															.	.	.	.	.	.															.																													.
Template Conservation															.	.	.	.	.	.															.
Template Sequence		E	M	A	S	S	F	V	K	G	V	Q	S	Q	.	.	.	.	.	.	G	V	G	A	C	I	K	H	F	V	A	N	N	Q	.	E	T	N	R	M	V	V	D	T	I	V	S	E	R	A	L	R	E	I	Y	L	R	G	F	E	I	A	V	K	K	S	K	P	W	S	V	M	S	A	Y	N	K	L	N	G	K
Template Known Secondary structure													T	T	.	.	.	.	.	.	T		B							T	T				.		T	T	T	T	T													T															S						S	S			T	T
Template Predicted Secondary structure															.	.	.	.	.	.															.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.										.	.	.	.	.	330	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	T	S	D	S	W	L	L	K	D	V	L	R	D	Q	W	G	F	K	G	I	T	V	S	D	H	G	A	I	K	E	L	I	K	H	G	T	A	A	D	P	E	D	A	V	R	V	A	L	K	S	G	I	N	M	S	M	S	D	E	Y	Y	.	.	.	.	.	.	.	.	.	S	K	Y	L	P	G	L	I
Query Conservation																																																																	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	C	S	Q	N	E	W	L	L	K	K	V	L	R	E	E	W	G	F	E	G	F	V	M	S	D	W	Y	A	G	D	N	P	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	K	A	G	N	D	L	I	M	P	G	K	A	Y	Q	V	N	T	E	R	R	D	E	I	E	E	I	M	E	A	L
Template Known Secondary structure			G	G	G						T							T				S						T	T		S	S					.	.	.	.	.	.	.	.	.	.	.	.	.					T			B	B		S			G	G	G	T		T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.														.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	G	K	V	T	M	A	E	L	D	D	A	A	R	H	V	L	N	V	K	Y	D	M	G	L	F	N	D	P	Y	S	H	L	G	P	K	E	S	D	P	V	D	T	N	A	E	S	R	L	H	R	K	E	A	R	E	V	A	R	E	S	L	V	L	L	K	N	R	L	E	T	L	P	L	K	K	S	A	T
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		K	E	G	K	L	S	E	E	V	L	D	E	C	V	R	N	I	L	K	V	L	V	N	A	P	S	F	K	N	Y	R	Y	S	.	.	.	.	.	.	.	.	.	.	N	K	P	D	L	E	K	H	A	K	V	A	Y	E	A	G	A	E	G	V	V	L	L	R	N	E	.	E	A	L	P	L	S	E	N	S	K
Template Known Secondary structure				T	S	S																	T	T	S	G	G	G	G	T					.	.	.	.	.	.	.	.	.	.	S																									S	.	S			S			T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.											.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	V	V	G	P	L	A	D	S	K	R	D	V	M	G	S	W	S	A	A	G	V	A	D	Q	S	V	T	V	L	T	G	I	K	N	A	V	G	E	N	G	K	V	L	Y	A	K	G	A	N	V	T	S	D	K	G	I	I	D	F	L	N	Q	Y	E	E	A	V	K	V	D	P	R	S	P	Q	E	M	I
Query Conservation
Alig confidence												.																															.
Template Conservation												.																															.
Template Sequence		I	A	L	F	G	T	G	Q	I	E	.	T	I	K	G	G	T	G	S	G	D	T	H	P	R	Y	A	I	S	I	L	E	G	I	K	E	R	G	L	N	F	.	D	E	E	L	A	K	T	Y	E	D	Y	I	K	K	M	R	E	T	E	E	Y	K	P	R	R	I	I	K	P	K	L	P	E	N	F	L	S	E
Template Known Secondary structure						S	G	G	G	T	S	.				S		B	S	T	T					S												T	T			B	.																		S	T	T	T	S		B			B						S			S
Template Predicted Secondary structure												.																															.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.		.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.		.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.					540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure																											.																							.	.	.	.
Query SS confidence																											.																							.	.	.	.
Query Sequence		D	E	A	V	Q	T	A	K	Q	S	D	V	V	V	A	V	V	G	E	A	Q	G	M	A	H	.	E	A	S	S	R	T	D	I	T	I	P	Q	S	Q	R	D	L	I	A	A	L	K	.	.	.	.	A	T	G	K	P	L	V	L	V	L	M	N	G	R	P	L	A	L	V	K	E	D	Q	Q	A	D	A	I
Query Conservation																											.																							.	.	.	.
Alig confidence																											.																							.	.	.	.
Template Conservation
Template Sequence		K	E	I	H	K	L	A	K	K	N	D	V	A	V	I	V	I	S	R	I	S	G	E	G	Y	D	R	K	P	V	K	G	D	F	Y	L	S	D	D	E	T	D	L	I	K	T	V	S	R	E	F	H	E	Q	G	K	K	V	I	V	L	L	N	I	G	S	P	V	E	V	V	S	W	R	D	L	V	D	G	I
Template Known Secondary structure												S											B	T	T					S	S	B	T	T	T	B																			T	T										S	S					T	T	T	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.				.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.		.	.	.	640	.	.	.
Predicted Secondary structure																																															.	.	.																									.
Query SS confidence																																															.	.	.																									.
Query Sequence		L	E	T	W	F	A	G	T	E	G	G	N	A	I	A	D	V	L	F	G	D	Y	N	P	S	G	K	L	P	M	S	F	P	R	S	V	G	Q	I	P	V	Y	Y	S	H	.	.	.	L	N	T	G	R	P	Y	N	A	D	K	P	N	K	Y	T	S	R	Y	F	D	E	A	N	.	G	A	L	Y	P	F	G
Query Conservation																																															.	.	.																									.
Alig confidence																																															.	.	.																									.
Template Conservation
Template Sequence		L	L	V	W	Q	A	G	Q	E	T	G	R	I	V	A	D	V	L	T	G	R	I	N	P	S	G	K	L	P	T	T	F	P	R	D	Y	S	D	V	P	S	W	T	F	P	G	E	P	K	D	N	P	Q	K	V	V	Y	E	E	D	I	Y	V	G	Y	R	Y	Y	D	T	F	G	V	E	P	A	Y	E	F	G
Template Known Secondary structure								G	G	G											T	S	S							S	S				S	S	G	G	G		S		T	T	T	T		B	S	T	T	S		S					T	T	T	T			T								T							T	T
Template Predicted Secondary structure
Template SS confidence
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.		.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		Y	G	L	S	Y	T	T	F	T	V	S	D	V	K	L	S	A	P	T	M	K	R	D	G	K	V	T	A	S	V	Q	V	T	N	T	G	K	R	E	G	A	T	V	V	Q	M	Y	L	Q	D	V	T	A	S	M	S	R	P	V	K	Q	L	K	G	F	E	K	I	T	.	L	K	P	G	E	T	Q	T	V	S
Query Conservation																																																																							.
Alig confidence																				.	.	.	.																																																.
Template Conservation																				.	.	.	.
Template Sequence		Y	G	L	S	Y	T	T	F	E	Y	S	D	L	N	V	S	F	D	.	.	.	.	G	E	T	L	R	V	Q	Y	R	I	E	N	T	G	G	R	A	G	K	E	V	S	Q	V	Y	I	K	A	P	K	G	K	I	D	K	P	F	Q	E	L	K	A	F	H	K	T	R	L	L	N	P	G	E	S	E	E	V	V
Template Known Secondary structure				B		S	S													.	.	.	.	S	S												S	S	S		B													S	S	S				S												B		T	T
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.					.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.		.	760	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		F	P	I	D	I	E	A	L	K	F	W	N	Q	Q	M	K	Y	D	A	E	P	G	K	F	N	V	F	I	G	T	D	S	A	R	V	K	.	K	G	E	F	E	L
Query Conservation																																						.
Alig confidence														.																								.
Template Conservation														.
Template Sequence		L	E	I	P	V	R	D	L	A	S	F	N	.	G	E	E	W	V	V	E	A	G	E	Y	E	V	R	V	G	A	S	S	R	N	I	K	L	K	G	T	F	S	V
Template Known Secondary structure						G	G	G	G					.	S	S																	T	T
Template Predicted Secondary structure														.
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.		.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.