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Job DescriptionP33363
Confidence100.00%DateThu Jan 5 11:52:06 GMT 2012
Rank4Aligned Residues557
% Identity33%Templatec1ex1A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:protein (beta-d-glucan exohydrolase isoenzyme exo1); PDBTitle: beta-d-glucan exohydrolase from barley
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.........70.........80..... ....90
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Query Sequence  LFGNHPLTPEARDAFVTELLKKMTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVT. . . . . . . . . . . . RQDIR
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Template Sequence  LYKDATKPVEDR. . . VADLLGRMTLAEKIGQMTQIERLVATP. . . . . DVLRDNFIGSLLSGGGSVPRKGATAKEWQDMVD
Template Known Secondary structure  GGG
TTS
...TT

TGGG

.....TT


TT

SSTT

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   4.....10..... ....20.........30.........40.. .......50.........60.........70.....
 
   91........100.........110...... ...120.........130.........140.........150.........160.....
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Query Sequence  AMQDQVMELSRLKIPLFFAYDVLHGQ. . . . . RTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVDVSRDP
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Template Conservation    
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Template Sequence  GFQKAC. MSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYLVKRIGEATALEVRATGIQYAFAPCIAVCRDP
Template Known Secondary structure  .TSSS





SSSSTTSTT





T
TTT




B





T
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   76...80. ........90.........100.........110.........120.........130.........140.........150....
 
   166...170.........180.........190......... 200.........210.........220.........230.....
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Query Sequence  RWGRASEGFGEDTYLTSTMGKTMVEAMQGKSPAD. . . . . . . . . . RYSVMTSVKHFAAYGAVEGGKEYNTVDMSPQRLFND
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Template Sequence  RWGRCYESYSEDRRIVQSMT. ELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNI
Template Known Secondary structure  TSTTGGGSS
SST.T



TT

TT




STTS
B
TTGGG
GGG
TT



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   155....160.........170.... .....180.........190.........200.........210.........220.........230...
 
   236...240.........250.........260.........270.........280.........290.........300.........310.....
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Query Sequence  YMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRDQWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGI
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Template Sequence  HMPAYKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRIT. TPAGSDYSYSVKASILAGL
Template Known Secondary structure  TSTT


SSTTGGG





TTS


S

TTTTGGGS.SSTTS
T
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   234.....240.........250.........260.........270.........280.........290... ......300.........310..
 
   316...320... ......330.........340.........350.........360.........370.........380.........390..
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Query Sequence  NMSMSDEY. . . YSKYLPGLIKSGKVTMAELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVAR
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Template Sequence  DMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYA. . . . . . DPAMAEQLGKQEHRDLAREAAR
Template Known Secondary structure 
B

S
TTSS
TTTTT

S
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GGGGGGTT
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   313......320.........330.........340.........350.........360.... .....370.........380......
 
   393......400... ......410 .........420.........430 .........440.........450.........460.
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Query Sequence  ESLVLLKNRLE. . . . . TLPLKKS. ATIAVVGPLADSKRDVMGSW. . . . . SAAGVADQSVTVLTGIKNAVGENGKVLYAKG
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Template Sequence  KSLVLLKNGKTSTDAPLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVVFAEN
Template Known Secondary structure 
SSSTTS



S

S

SSTTSS

SSSSSTT

SS

SS
B
S
TTSSS
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   387..390.........400.........410.........420.........430.........440.........450.........460......
 
   462.......470.........480.........490.........500.........510.........520.........530.........540.
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Query Sequence  ANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT
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Template Sequence  PD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AEFVKSGGFSYAIVAVGEHPYTETKG. DNLNLTIPEPGLSTVQAVCG.
Template Known Secondary structure 

..............................TT
S





GGGG.

SS



SSS.
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   467. .470.........480.........490.... .....500.........510....
 
   542.......550.........560.........570.........580.........590.........600.........610.........620.
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Query Sequence  GKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNA
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Template Sequence  GVRCATVLISGRPVVVQPLLAASDALVAAWLPGSE. GQGVTDALFGDFGFTGRLPRTWFKSVDQLP. . . . . . . . . . . . . .
Template Known Secondary structure  S

SS




S




SB.TTTSS





SS
B
S
GGG
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   515....520.........530.........540......... 550.........560.........570.........
 
   622.......630.........640.........650
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Query Sequence  DKPNKYTSRYFDEANGALYPFGYGLSYTT
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Template Sequence  . . . MNVGDAHYD. . . . PLFRLGYGLTTNA
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TT
TT

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SB
TT

B



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   580........ .590.........600.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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