|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | |
|
|
|
. | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
60 | . | . | . | . | . | . | . | . | . | 70 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
| . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | Q | D | E | Y | Y | M | A | R | A | L | K | L | A | Q | R | G | R | F | T | T | H | P | N | P | N | V | G | C | V | I | V | K | D | G | E | I | V | G | E | G | Y | H | Q | . |
. |
. |
. |
R | A | G | E | P | H | A | E | V | H | A | L | R | M | A | . |
. |
. |
. |
. |
G | E | K | A | K | G | A | T | A | Y | V | T |
Query Conservation |   |
  |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|   |   |   |   |
|
|   |   |
|   |   |   | . | . | . | . |   |   |
|   |   |
|
|
|   |   |
|   |   |   |
| . | . | . | . | . |   |   |   |   |   |   |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|
|   |   |
|   |   |   |
|   |   |
| . | . |   |   |   |
|   |   |
|
|
|
|
|
|
|   |   |   |   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
Template Sequence |   |
M | G | K | E | Y | F | L | K | V | A | L | R | E | A | K | R | A | . |
. |
F | E | K | G | E | V | P | V | G | A | I | I | V | K | E | G | E | I | I | S | K | A | H | N | S | V | E | E | L | K | D | P | T | A | H | A | E | M | L | A | I | K | E | A | C | R | R | L | N | T | K | Y | L | E | G | C | E | L | Y | V | T |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  | T | T | S |
|
|
|  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |
|
|  |  |  |  | T |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |
|
| T | T |  |  |  |  |  | S |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | |
|
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
  |
  |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
|
|
|
. | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . |  |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | E | P | C | S | H | H | G | R | T | P | P | C | C | D | A | L | I | A | A | G | V | A | R | V | V | A | S | M | Q | D | P | N | P | Q | V | A | G | R | G | L | Y | R | L | Q | . |
. |
. |
. |
Q | A | G | I | D | V | S | H | G | L | M | M | S | E | A | E | Q | L | N | K | G | F | L | K | R | M | R | T | G |
Query Conservation |   |
|
|
|
|   |   |   |
|   |
|
|   |
|   |   |   |
|   |   |   |
|
|   |   |
|
|   |   |   |   |
|
|   |   |   |   |   |
|   |
|   |   |   |
|   | . | . | . | . |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
| . | . | . | . | . | . |   |
|
|   |   |
|
|   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
| . |
|   |   |   |
|
|   |   |
|
|   |   |   |
|   |   |
Template Sequence |   |
L | E | P | C | . |
. |
. |
. |
. |
. |
I | M | C | S | Y | A | L | V | L | S | R | I | E | K | V | I | F | S | A | L | D | K | K | H | G | G | V | V | S | V | F | N | I | L | D | E | P | T | L | N | H | R | V | K | W | E | Y | Y | P | L | E | . |
E | A | S | E | L | L | S | E | F | F | K | K | L | R | N | N |
Template Known Secondary structure |   |
S |
|
| B | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  | S | S |
|
| T | T | T | B | T | T | T | T | S |
|
| G | G | G |
| T | T |
| S | S |
|
|  |  |  |  |
|
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
79 | 80 | . | . | |
|
|
|
|
|
. | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | |
. | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . |
  |