|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
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. | . | . | . | . | . | . | 40 | . | . | . | . | |
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. | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | |
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60 | . | . | . | . | . | . | . | . | . | 70 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
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|  |  |  |  |  |  | . | . |  |
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|  |  |  |  |  |  |  |
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| . | . | . | . |
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|  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |
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|  |  |  |  |  |
|
Query SS confidence |   |
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| . |
. |
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| . |
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. |
. |
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| . |
. |
. |
. |
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Query Sequence |   |
D | E | Y | Y | M | A | R | A | L | K | L | A | Q | R | G | R | F | T | T | H | P | N | P | N | V | G | C | V | I | V | . |
. |
K | D | G | E | I | V | G | E | G | Y | H | Q | . |
. |
. |
. |
R | A | G | E | P | H | A | E | V | H | A | L | R | M | A | . |
. |
. |
. |
G | E | K | A | K | G | A | T | A | Y | V | T | L |
Query Conservation |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
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|   |
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| . | . |   |   |   |   |
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|   |   |
|   |   |   | . | . | . | . |   |   |
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|   |   |
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| . | . | . | . |   |   |   |   |   |   |   |
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Alig confidence |   |
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| . | . |
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| . | . |
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| . | . | . | . |
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| . | . | . | . |
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Template Conservation |   |
|   |   |   |
|   |   |
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|   |   |
|   |   |
|   |   |   |
|   |   | . | . |
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|   |   |   |   |
|   |
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|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
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|   |   |
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|   |   |
|   |   |   |   |   |   |   |
|   |   |   |
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|   |
|   |
Template Sequence |   |
D | Q | K | G | M | D | I | A | Y | E | E | A | A | L | G | Y | K | E | G | G | V | . |
. |
P | I | G | G | C | L | I | N | N | K | D | G | S | V | L | G | R | G | H | N | M | R | F | Q | K | G | S | A | T | L | H | G | E | I | S | T | L | E | N | C | G | R | L | E | G | K | V | Y | K | D | T | T | L | Y | T | T | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
| . | . |
|
|  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |  |  |
|
|  |  |  |  | T |
| S | S |
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|  |  |  |  |  |  |  |  |  |
| S |
|
|  |  |  |  | T | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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| . | . |
|  |  |  |  |  |  |  |
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|  |  |  |  |  |  |  |
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|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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|  |  |  |  |  |
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Template SS confidence |   |
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  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | |
|
. | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . |
  |
  |   |
73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . |
Predicted Secondary structure |   |
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|  |  |  |  |  |  |  |  |
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|  |  |  |  |  |
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|  |  |  |  |  |  |  |
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|  |  |  |  |
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|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query SS confidence |   |
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Query Sequence |   |
E | P | C | S | H | H | G | R | T | P | P | C | C | D | A | L | I | A | A | G | V | A | R | V | V | A | S | M | Q | D | P | N | P | Q | V | A | G | R | G | L | Y | R | L | Q | Q | A | G | I | D | V | S | H | G | L | M | M | S | E | A | E | Q | L | N | K | G | F | L | K | R | M | R | T |
Query Conservation |   |
|
|
|   |   |   |
|   |
|
|   |
|   |   |   |
|   |   |   |
|
|   |   |
|
|   |   |   |   |
|
|   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
| . | . | . | . | . | . |
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| . | . | . |
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| . |
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Template Conservation |   |
|
|
| . | . | . | . | . | . |   |
|
|   |   |
|
|   |   |   |
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|   |
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|
|   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   | . |   |
|   |   |
|
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |
Template Sequence |   |
S | P | C | . |
. |
. |
. |
. |
. |
D | M | C | T | G | A | I | I | M | Y | G | I | P | R | C | V | V | G | E | N | V | N | F | . |
. |
. |
K | S | K | G | E | K | Y | L | Q | T | R | G | H | E | V | V | . |
V | V | D | D | E | R | C | K | K | I | M | K | Q | F | I | D | E | R | P | Q |
Template Known Secondary structure |   |
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  | S | S | S |
| . | . | . |
|
| T |  |  |  |  |  |  |  | T | T |
|  |  |  | . |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |
Template Predicted Secondary structure |   |
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
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|
| . | . | . |
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  | . |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
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Template SS confidence |   |
|
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  |   |
89 | 90 | . | |
|
|
|
|
|
. | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | |
|
|
. | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | |
. | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 |
  |