 |
Job Description | P25539 | Confidence | 20.29% | Date | Thu Jan 5 11:42:04 GMT 2012 |
Rank | 123 | Aligned Residues | 84 |
% Identity | 26% | Template | c3nvtA_ |
PDB info |
PDB header:transferase/isomerase | Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase; |
PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e
|
Resolution | 1.95 Å |
|
 |
  |   |
74 | . | . | . | . | . | 80 | . | . | |
|
. | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 110 | . | . | . | . | . | . | |
|
|
|
. | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | |
|
|
|
|
|
|
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
| . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|  |  |  |  |  |  | . | . | . | . |  |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
P | C | S | H | H | G | R | T | P | . |
. |
P | C | C | D | A | L | I | A | A | G | V | A | R | V | V | A | S | M | Q | D | P | N | P | Q | V | . |
. |
. |
. |
. |
. |
A | G | R | G | L | Y | R | L | Q | . |
. |
. |
. |
Q | A | G | I | D | V | S | H | G | L | M | M | S | E | A | E | Q | L | . |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|
|   |   |   |
|   |
|
| . | . |   |
|   |   |   |
|   |   |   |
|
|   |   |
|
|   |   |   |   |
|
|   |   |   |   | . | . | . | . | . | . |   |
|   |
|   |   |   |
|   | . | . | . | . |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
Template Conservation |   |
|
|
|
|
|
|   |
|   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |
|
|
|
|
|
|   |   |
|   |
|   |
|   |
|
|
|   |   |
|   |   |
|   |   |   |   |
|
|
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
Template Sequence |   |
P | C | S | V | E | S | Y | E | Q | V | A | A | V | A | E | S | I | K | A | K | G | L | K | L | I | R | G | G | A | F | K | P | R | T | S | P | Y | D | F | Q | G | L | G | L | E | G | L | K | I | L | K | R | V | S | D | E | Y | G | L | G | V | I | S | E | I | V | T | P | A | D | I | E | V | A | L | D | Y | V | D | V |
Template Known Secondary structure |   |
| S | B |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |
| B | S | S |
|
|
| S | S | T | T | S |
|
|
|
| T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |
|
| S | G | G | G |  |  |  |  | T | T | T |
| S |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
125 | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
135 | . | . | . | . | 140 | . | . | |
. | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | . |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | K | G | F | L | K | R | M | . |
R | T | G | F | P | Y | I | Q | L | K | L | G | A | S | L | D |
Query Conservation |   |
. | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   | . |   |   |   |
|
|   |
|   |
|
|   |
|   |
|
|
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |
|
|
| . |
|   |
|
|   |
|   |   |   |   |
Template Sequence |   |
I | Q | I | G | A | R | N | M | Q | N | F | E | L | L | K | A | A | G | R | V | D | K | P | . |
I | L | L | K | R | G | L | S | A | T |
Template Known Secondary structure |   |
 |  |  |
| G | G | G | T | T |
|  |  |  |  |  |  |  |  | T | S | S | S |
| . |  |  |  |  |
|
| T | T |
|
|
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  | . |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
205 | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | |
. | . | 230 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|