Job Description P25539 Confidence 97.66% Date Thu Jan 5 11:42:04 GMT 2012 Rank 54 Aligned Residues 85 % Identity 34% Template c3g8qA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:predicted rna-binding protein, contains thump PDBTitle: a cytidine deaminase edits c-to-u in transfer rnas in2 archaea Resolution 2.40 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	P	N	V	G	C	V	I	V	K	D	G	E	I	V	G	E	G	Y	H	Q	R	A	G	E	P	H	A	E	V	H	A	L	R	M	A	G	E	K	A	K	G	A	T	A	Y	V	T	L	E	P	C	S	H	H	G	R	T	P	P	C	C	D	A	L	I	A	A	G	V	A	R	V	V	A	S	M	Q	D
Query Conservation
Alig confidence																								.	.	.												.	.																		.	.	.	.	.	.																.	.	.	.
Template Conservation																								.	.	.												.	.																		.	.	.	.	.	.																.	.	.	.
Template Sequence		P	K	R	T	V	T	A	A	L	L	E	G	G	E	I	V	A	V	E	E	A	D	.	.	.	D	E	H	A	E	R	K	L	V	R	R	.	.	H	D	V	E	G	K	V	V	F	V	T	A	R	P	C	L	Y	.	.	.	.	.	.	C	A	R	E	L	A	E	A	G	V	A	G	V	V	Y	.	.	.	.
Template Known Secondary structure				S	S								T	T									S	.	.	.	S	S										.	.	S			T	T						S	S						.	.	.	.	.	.							T	T	T							.	.	.	.
Template Predicted Secondary structure																								.	.	.												.	.																		.	.	.	.	.	.																.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.							70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	P	Q	V	A	G	R	G	L	Y	R	L	Q	Q	A	G	I	D	V	S
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	L	G	R	G	R	G	L	G	P	Y	Y	L	A	R	S	G	V	E	V	V
Template Known Secondary structure		.				S	S									T	T	T
Template Predicted Secondary structure		.
Template SS confidence
			85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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