Job Description P25539 Confidence 100.00% Date Thu Jan 5 11:42:04 GMT 2012 Rank 2 Aligned Residues 352 % Identity 97% Template c2o7pA_ PDB info PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	E	Y	Y	M	A	R	A	L	K	L	A	Q	R	G	R	F	T	T	H	P	N	P	N	V	G	C	V	I	V	K	D	G	E	I	V	G	E	G	Y	H	Q	R	A	G	E	P	H	A	E	V	H	A	L	R	M	A	G	E	K	A	K	G	A	T	A	Y	V	T	L	E	P	C	S	H	H	G	R	T
Query Conservation
Alig confidence																																																																												.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		Q	D	E	Y	Y	X	A	R	A	L	K	L	A	Q	R	G	R	F	T	T	H	P	N	P	N	V	G	C	V	I	V	K	D	G	E	I	V	G	E	G	Y	H	Q	R	A	G	E	P	H	A	E	V	H	A	L	R	X	A	G	E	K	A	K	G	A	T	A	Y	V	T	L	E	P	C	.	.	.	.	.	.
Template Known Secondary structure															G	G	G	T	T	T		T	T	S										T	T										S	T	T	S												G	G	G	G	S	S	S										.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	C	C	D	A	L	I	A	A	G	V	A	R	V	V	A	S	M	Q	D	P	N	P	Q	V	A	G	R	G	L	Y	R	L	Q	Q	A	G	I	D	V	S	H	G	L	M	M	S	E	A	E	Q	L	N	K	G	F	L	K	R	M	R	T	G	F	P	Y	I	Q	L	K	L	G	A	S	L	D	G	R	T
Query Conservation
Alig confidence																										.
Template Conservation																										.
Template Sequence		P	P	C	C	D	A	L	I	A	A	G	V	A	R	V	V	A	S	X	Q	D	P	N	Q	.	V	A	G	R	G	L	Y	R	L	Q	Q	A	G	I	D	V	S	H	G	L	X	X	S	E	A	E	Q	L	N	K	G	F	L	K	R	X	R	T	G	F	P	Y	I	Q	L	K	L	G	A	S	L	D	G	R	T
Template Known Secondary structure												T		S												.												T	T							T	T								T									S	S	S											T	T	S
Template Predicted Secondary structure																										.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	A	S	G	E	S	Q	W	I	T	S	P	Q	A	R	R	D	V	Q	L	L	R	A	Q	S	H	A	I	L	T	S	S	A	T	V	L	A	D	D	P	A	L	T	V	R	W	S	E	L	D	E	Q	T	Q	A	L	Y	P	Q	Q	N	L	R	Q	P	I	R	I	V	I	D	S	Q	N	R	V	T	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	X	A	S	G	E	S	Q	W	I	T	S	P	Q	A	R	R	D	V	Q	L	L	R	A	Q	S	H	A	I	L	T	S	S	A	T	V	L	A	D	D	P	A	L	T	V	R	W	S	E	L	D	E	Q	T	Q	A	L	Y	P	Q	Q	N	L	R	Q	P	I	R	I	V	I	D	S	Q	N	R	V	T	P	V
Template Known Secondary structure				S	S		G	G	G	T	S		S													T		S																				G	G	G			T	T	T	T	S	S			G	G	G											T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	I	V	Q	Q	P	G	E	T	W	F	A	R	T	Q	E	D	S	R	E	W	P	E	T	V	R	T	L	L	I	P	E	H	K	G	H	L	D	L	V	V	L	M	M	Q	L	G	K	Q	Q	I	N	S	I	W	V	E	A	G	P	T	L	A	G	A	L	L	Q	A	G	L	V	D	E	L	I	V	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	R	I	V	Q	Q	P	G	E	T	W	F	A	R	T	Q	E	D	S	R	E	W	P	E	T	V	R	T	L	L	I	P	E	H	K	G	H	L	D	L	V	V	L	X	X	Q	L	G	K	Q	Q	I	N	S	I	W	V	E	A	G	P	T	L	A	G	A	L	L	Q	A	G	L	V	D	E	L	I	V	Y	I
Template Known Secondary structure		S	G	G	G	S	S	S	S							S	S				S				T	T										T	T														T	T																				T			S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	K	L	L	G	S	D	A	R	G	L	C	T	L	P	G	L	E	K	L	A	D	A	P	Q	F	K	F	K	E	I	R	H	V	G	P	D	V	C	L	H	L	V	G	A
Query Conservation
Alig confidence																			.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.
Template Sequence		A	P	K	L	L	G	S	D	A	R	G	L	C	T	L	P	G	.	.	.	.	.	.	.	L	Q	F	K	F	K	E	I	R	H	V	G	P	D	V	C	L	H	L	V	G	A
Template Known Secondary structure			S					S	S	S			S						.	.	.	.	.	.	.												T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.								.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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