Job Description P25539 Confidence 96.84% Date Thu Jan 5 11:42:04 GMT 2012 Rank 64 Aligned Residues 110 % Identity 19% Template c2nytB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2; PDBTitle: the apobec2 crystal structure and functional implications2 for aid Resolution 2.50 Å

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		29	30	.	.	.			.	.	.				.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.						.
Predicted Secondary structure							.	.				.	.	.							.																									.	.	.	.	.																										.	.	.	.	.
Query SS confidence							.	.				.	.	.							.																									.	.	.	.	.																										.	.	.	.	.
Query Sequence		C	V	I	V	K	.	.	D	G	E	.	.	.	I	V	G	E	G	Y	.	H	Q	R	A	G	E	P	H	A	E	V	H	A	L	R	M	A	G	E	K	A	K	G	A	.	.	.	.	.	T	A	Y	V	T	L	E	P	C	S	H	H	G	R	T	P	P	C	C	D	A	L	I	A	A	.	.	.	.	.	G
Query Conservation							.	.				.	.	.							.																									.	.	.	.	.																										.	.	.	.	.
Alig confidence							.	.				.	.	.							.																									.	.	.	.	.												.	.	.	.	.	.									.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.
Template Sequence		C	Y	V	V	E	A	Q	G	K	G	G	Q	V	Q	A	S	R	G	Y	L	E	D	E	H	A	A	A	H	A	E	E	A	F	F	N	T	I	L	P	A	F	D	P	A	L	R	Y	N	V	T	W	Y	V	S	S	S	P	C	A	A	.	.	.	.	.	.	C	A	D	R	I	I	K	T	L	S	K	T	K	N
Template Known Secondary structure										S	S	S															S	S										T	S					T	T	S																.	.	.	.	.	.													T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130							.	.	.	.	.	.	.	.	.	140	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.
Predicted Secondary structure																			.	.																																				.	.	.	.
Query SS confidence																			.	.																																				.	.	.	.
Query Sequence		V	A	R	V	V	A	S	M	Q	D	P	N	P	Q	V	A	G	.	.	R	G	L	Y	R	L	Q	Q	A	G	I	D	V	S	H	G	L	M	M	S	E	A	E	Q	L	N	K	G	F	L	K	R	M	R	T	.	.	.	.	G	F	P	Y
Query Conservation																			.	.																																				.	.	.	.
Alig confidence																			.	.															.	.				.	.															.	.	.	.
Template Conservation																																			.	.				.	.
Template Sequence		L	R	L	L	I	L	V	G	R	L	F	M	W	E	E	P	E	I	Q	A	A	L	K	K	L	K	E	A	G	C	K	L	R	.	.	I	M	K	.	.	P	Q	D	F	E	Y	V	W	Q	N	F	V	E	Q	E	E	G	E	S	K	A	F
Template Known Secondary structure												T	T	T	T														T	T					.	.				.	.											T	B			T	T	S	S
Template Predicted Secondary structure																																			.	.				.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions