Job Description P25539 Confidence 100.00% Date Thu Jan 5 11:42:04 GMT 2012 Rank 1 Aligned Residues 352 % Identity 42% Template c2d5nB_ PDB info PDB header:hydrolase, oxidoreductase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis Resolution 2.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	Y	Y	M	A	R	A	L	K	L	A	Q	R	G	R	F	T	T	H	P	N	P	N	V	G	C	V	I	V	K	D	G	E	I	V	G	E	G	Y	H	Q	R	A	G	E	P	H	A	E	V	H	A	L	R	M	A	G	E	K	A	K	G	A	T	A	Y	V	T	L	E	P	C	S	H	H	G	R	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	Y	Y	M	K	L	A	L	D	L	A	K	Q	G	E	G	Q	T	E	S	N	P	L	V	G	A	V	V	V	K	D	G	Q	I	V	G	M	G	A	H	L	K	Y	G	E	A	H	A	E	V	H	A	I	H	M	A	G	A	H	A	E	G	A	D	I	Y	V	T	L	E	P	C	S	H	Y	G	K	T	P
Template Known Secondary structure															T	T	T	T	S	S	T	T	S										S	S	S									S	T	T	S												G	G	G	G	T	T														S	S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	C	C	D	A	L	I	A	A	G	V	A	R	V	V	A	S	M	Q	D	P	N	P	Q	V	A	G	R	G	L	Y	R	L	Q	Q	A	G	I	D	V	S	H	G	L	M	M	S	E	A	E	Q	L	N	K	G	F	L	K	R	M	R	T	G	F	P	Y	I	Q	L	K	L	G	A	S	L	D	G	R	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	C	A	E	L	I	I	N	S	G	I	K	R	V	F	V	A	M	R	D	P	N	P	L	V	A	G	R	G	I	S	M	M	K	E	A	G	I	E	V	R	E	G	I	L	A	D	Q	A	E	R	L	N	E	K	F	L	H	F	M	R	T	G	L	P	Y	V	T	L	K	A	A	A	S	L	D	G	K	I	A
Template Known Secondary structure										T	T											S	S	T	T	T	T	T								T	T	T							T	T	T	T					T	T										S	S											T	T	S	B	S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	S	G	E	S	Q	W	I	T	S	P	Q	A	R	R	D	V	Q	L	L	R	A	Q	S	H	A	I	L	T	S	S	A	T	V	L	A	D	D	P	A	L	T	V	R	W	S	E	L	D	E	Q	T	Q	A	L	Y	P	Q	Q	N	L	R	Q	P	I	R	I	V	I	D	S	Q	N	R	V	T	P	V	H
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	S	T	G	D	S	K	W	I	T	S	E	A	A	R	Q	D	A	Q	Q	Y	R	K	T	H	Q	S	I	L	V	G	V	G	T	V	K	A	D	N	P	S	L	T	C	R	L	P	N	V	T	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	P	V	R	V	I	L	D	T	V	L	S	I	P	E	D	A
Template Known Secondary structure			T	T				S		S	S															S	S										T	T	T								S	S				.	.	.	.	.	.	.	.	.	.	.	.	S									S	S					T	T	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.													.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.				.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure									.																				.	.	.
Query SS confidence									.																				.	.	.
Query Sequence		R	I	V	Q	Q	P	G	.	E	T	W	F	A	R	T	Q	E	D	S	R	E	W	P	E	T	V	R	.	.	.	T	L	L	I	P	E	H	K	G	H	L	D	L	V	V	L	M	M	Q	L	G	K	Q	Q	I	N	S	I	W	V	E	A	G	P	T	L	A	G	A	L	L	Q	A	G	L	V	D	E	L	I
Query Conservation									.																				.	.	.
Alig confidence									.																				.	.	.
Template Conservation
Template Sequence		K	V	I	C	D	Q	I	A	P	T	W	I	F	T	T	A	R	A	D	E	E	K	K	K	R	L	S	A	F	G	V	N	I	F	T	L	E	T	E	R	I	Q	I	P	D	V	L	K	I	L	A	E	E	G	I	M	S	V	Y	V	E	G	G	S	A	V	H	G	S	F	V	K	E	G	C	F	Q	E	I	I
Template Known Secondary structure		T	T	T	S	S		S	S								T	T	S									T	T	T	T							S	S	S	S													T	T																				T			S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		V	Y	I	A	P	K	L	L	G	S	.	D	A	R	G	L	C	T	L	P	G	L	E	K	L	A	D	A	P	Q	F	K	F	K	E	I	R	H	V	G	P	D	V	C	L	H	L	V	G
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		F	Y	F	A	P	K	L	I	G	G	T	H	A	P	S	L	I	S	G	E	G	F	Q	S	M	K	D	V	P	L	L	Q	F	T	D	I	T	Q	I	G	R	D	I	K	L	T	A	K	P
Template Known Secondary structure						S						T	T	S		B	S	S		S	S			S	S	G	G	G	S												T	T
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions