Job Description P0ADP5 Confidence 2.16% Date Thu Jan 5 11:21:29 GMT 2012 Rank 36 Aligned Residues 182 % Identity 12% Template c3am6C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:rhodopsin-2; PDBTitle: crystal structure of the proton pumping rhodopsin ar2 from marine alga2 acetabularia acetabulum Resolution 3.20 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.									.	.	.	.	.	.	.	100
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.
Query Sequence		Y	F	A	V	L	V	R	V	G	L	A	A	L	V	F	L	P	F	L	R	T	R	G	N	S	L	K	T	V	G	L	Y	M	L	V	G	A	M	Q	L	G	V	M	Y	M	L	S	F	R	A	Y	L	Y	L	T	V	S	E	L	L	L	F	T	V	.	.	.	.	.	.	.	.	L	T	P	L	Y	I	T	L
Query Conservation																																																																		.	.	.	.	.	.	.	.
Alig confidence																	.	.																																																.	.	.	.	.	.	.	.
Template Conservation																	.	.
Template Sequence		Q	W	I	V	F	A	I	M	A	A	A	A	I	A	F	.	.	G	V	A	V	H	F	R	P	L	K	S	A	Y	Y	I	N	I	A	I	C	T	I	A	A	T	A	Y	Y	A	M	A	V	N	Y	Q	D	L	T	M	N	G	E	R	Q	V	V	Y	A	R	Y	I	D	W	V	L	T	T	P	L	L	L	L	D
Template Known Secondary structure																	.	.				G	G	G																											T	T	T	S			B	S	S	S	B	B			T
Template Predicted Secondary structure																	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	D	I	M	S	K	R	R	L	R	W	G	Y	A	F	S	A	L	L	A	V	I	G	A	G	I	I	R	Y	D	Q	V	T	D	H	F	W	T	G	L	L	L	V	Q	L	S	N	I	T	F	A	I	G	M	V	G	Y	K	R	L	M	E	T	R	P	M	P	Q	H	N	A	F	A	W	F	Y	L	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	V	M	T	K	M	G	G	V	M	I	S	W	V	I	G	A	D	I	F	M	I	V	F	G	I	L	G	A	F	E	D	E	H	K	F	K	W	V	Y	F	I	A	G	C	V	M	Q	A	V	L	T	Y	G	M	Y	N	A	T	W	K	D	D	K	S	P	E	Y	H	S	S	Y	V	S	L	L	V	F	L
Template Known Secondary structure				T	T	S																										T																															S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	V	A	V	I	A	W	F	L	L	G	N	A	Q	K	M	P	Q	T	T	L	Q	W	G	I	L	V	F	L	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	L	W	V	F	Y	P	V	V	W	A	F	G	S	G	S	G	V	L	S	V	D	N	E	A	I	L	M	G	I	L
Template Known Secondary structure						T									T	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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