Job Description P0C066 Confidence 100.00% Date Thu Jan 5 11:29:46 GMT 2012 Rank 5 Aligned Residues 140 % Identity 24% Template c3gxkB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:goose-type lysozyme 1; PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9 Resolution 1.90 Å

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		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.									.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.
Query Sequence		P	N	H	L	D	K	R	A	H	K	Y	L	G	M	V	R	Q	A	S	R	K	Y	G	V	D	E	S	L	I	L	A	I	M	Q	T	E	S	S	F	N	P	Y	A	V	S	R	S	.	.	.	.	.	.	.	.	D	A	L	G	L	M	Q	V	V	Q	H	T	A	G	K	D	V	F	R	S	Q	G	K	S	G
Query Conservation																																																	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	T	D	A	G	R	M	E	K	Y	K	S	F	I	N	N	V	A	K	K	H	V	V	D	P	A	V	I	A	A	I	I	S	R	E	S	R	A	G	N	V	I	F	N	T	T	P	P	G	W	G	D	N	Y	N	G	F	G	L	M	Q	V	D	K	R	Y	H	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										G	G	G												T															G	G	G	T	T	T	T	T	S	S	S	T	T			T	T	T	T			T	T	T	T			T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		T	P	S	R	S	F	L	F	D	P	A	S	N	I	D	T	G	T	A	Y	L	A	M	L	N	N	V	Y	L	G	G	I	D	N	P	T	S	.	.	R	R	Y	A	V	I	T	A	Y	N	G	G	A	G	S	V	L	R	V	F	S	N	D	K	I	Q	A	A	N	I	I	N	T	M	T	P	G	D	V	Y	Q
Query Conservation																																							.	.
Alig confidence		.	.																																				.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	E	P	R	G	A	W	N	S	E	E	H	I	D	Q	A	T	G	I	L	V	N	F	I	Q	L	I	Q	K	K	F	P	S	W	S	T	E	Q	Q	L	K	G	A	I	A	A	Y	N	T	G	D	G	R	V	E	S	Y	E	S	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.				S		T	T	S																							T	T	S																	G	G	G				S	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	T	T	R	H	P	S	A	E	S	R	R	Y	L	Y	K	V	N	T	A	Q	K	S	Y	R	R	R
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	S	R	T	T	G	K	D	Y	S	N	D	V	V	A	R	A	Q	W	Y	K	K	N
Template Known Secondary structure		.	.	.	.	.	.	T	T	S	G	G	G															T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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