Job Description P0ABT8 Confidence 3.68% Date Thu Jan 5 11:16:21 GMT 2012 Rank 13 Aligned Residues 232 % Identity 10% Template c3hd6A_ PDB info PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg Resolution 2.10 Å

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		4	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.									.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure														.																																																	.	.	.	.	.	.	.	.
Query SS confidence														.																																																	.	.	.	.	.	.	.	.
Query Sequence		A	G	K	S	N	P	L	A	I	S	G	L	.	V	V	L	T	L	I	W	S	Y	S	W	I	F	M	K	Q	V	T	S	Y	I	G	A	F	D	F	T	A	L	R	C	I	F	G	A	L	V	L	F	I	V	L	L	L	R	G	R	G	.	.	.	.	.	.	.	.	M	R	P	T	P	F	K	Y	T	L	A
Query Conservation														.																																																	.	.	.	.	.	.	.	.
Alig confidence														.																																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	K	V	S	P	I	Q	L	L	I	M	T	F	F	Q	V	T	L	F	A	V	N	E	F	I	L	L	N	L	L	K	V	K	D	A	G	G	S	M	T	I	H	T	F	G	A	Y	F	G	L	T	V	T	R	I	L	Y	R	R	N	L	E	Q	S	K	E	R	Q	N	S	V	Y	Q	S	D	L	F	A	M
Template Known Secondary structure		T	T	S	S																									T	T	S					T	T		T	T	T	T															T			T	T	G	G	G	G	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.						.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.
Query SS confidence																																			.	.	.	.	.
Query Sequence		I	A	L	L	Q	T	C	G	M	V	G	L	A	Q	W	A	L	V	S	G	G	A	G	K	V	A	I	L	S	Y	T	M	P	.	.	.	.	.	F	W	V	V	I	F	A	A	L	F	L	G	E	R	L	R	R	G	Q	Y	F	A	I	L	I	A	A	F	G	L	F	L	V	L	Q	P	W	Q	L	D	F	S
Query Conservation																																			.	.	.	.	.
Alig confidence																																			.	.	.	.	.
Template Conservation
Template Sequence		I	G	T	L	F	L	W	M	Y	W	P	S	F	N	S	A	I	S	Y	H	G	D	S	Q	H	R	A	A	I	N	T	Y	C	S	L	A	A	C	V	L	T	S	V	A	I	S	S	A	L	H	K	K	G	K	L	D	M	V	H	I	Q	N	A	T	L	A	G	G	V	A	V	G	T	A	A	E	M	M	L	M
Template Known Secondary structure															T	T	T	T		S	S																													T	S	T	T											G	G	G						T	T	T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		S	M	K	S	A	M	L	A	I	L	S	G	V	S	W	G	A	S	A	I	V	.	.	.	.	A	K	R	L	Y	A	R	H	P	R	V	D	L	L	S	L	T	S	W	Q	M	L	Y	A	A	L	V	M	S	V	V	A	L	L	V	P	Q	R	E	I	D	W	Q	P	T	V	F	W	A	L	A	Y	S	A	I
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.																																	.
Template Conservation																																																											.
Template Sequence		P	Y	G	A	L	I	I	G	F	V	C	G	I	I	S	T	L	G	F	V	Y	L	T	P	F	L	E	S	R	L	H	I	Q	D	T	C	G	I	N	N	L	H	G	I	P	G	I	I	G	G	I	V	G	A	V	T	A	.	A	S	D	W	T	A	R	T	Q	G	K	F	Q	I	Y	G	L	L	V	T	L	A
Template Known Secondary structure																																				T	T						T																.
Template Predicted Secondary structure																																																											.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		226	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	T	A	L	A	W	S	L	W	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	L	M	G	G	I	I	V	G	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions