Job Description P0ABT8 Confidence 15.78% Date Thu Jan 5 11:16:21 GMT 2012 Rank 6 Aligned Residues 229 % Identity 10% Template c3b9yA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Resolution 1.85 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	K	S	N	P	L	A	I	S	G	L	V	V	L	T	L	I	W	S	Y	S	W	I	F	M	K	Q	V	T	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	A	F	D	F	T	A	L	R	C	I	F	G	A	L	V	L	F	I	V	L	L	L	R	G	R	G	M	R	P	T	P
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.
Template Sequence		L	G	R	L	R	V	F	Q	Y	A	L	L	.	.	.	A	L	F	I	V	P	V	Y	L	L	N	E	W	L	V	L	D	N	A	S	G	L	T	E	G	F	Q	D	S	A	G	S	I	A	I	H	A	F	G	A	Y	F	G	L	G	V	S	I	A	L	T	T	A	A	Q	R	A	Q	P	I	E	S	D	A	T
Template Known Secondary structure		T	T	S	S									.	.	.																T	T		T	T	S	S		T	T				T	T		T	T	T	T																						T	S
Template Predicted Secondary structure														.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																																					.	.	.	.	.																										.
Query SS confidence																																					.	.	.	.	.																										.
Query Sequence		F	K	Y	T	L	A	I	A	L	L	Q	T	C	G	M	V	G	L	A	Q	W	A	L	V	S	G	G	A	G	K	V	A	I	L	S	.	.	.	.	.	Y	T	M	P	F	W	V	V	I	F	A	A	L	F	L	G	E	R	L	R	R	G	Q	Y	F	.	A	I	L	I	A	A	F	G	L	F	L	V	L	Q
Query Conservation																																					.	.	.	.	.																										.
Alig confidence																																					.	.	.	.	.																										.
Template Conservation
Template Sequence		S	D	R	F	S	M	L	G	S	M	V	L	W	L	F	W	P	S	F	A	T	A	I	V	P	F	E	Q	M	P	Q	T	I	V	N	T	L	L	A	L	C	G	A	T	L	A	T	Y	F	L	S	A	L	F	H	K	G	K	A	S	I	V	D	M	A	N	A	A	L	A	G	G	V	A	I	G	S	V	C	N
Template Known Secondary structure																							T	T	S		G	G	G																											T	T	T											T	T							T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	W	Q	L	D	F	S	S	M	K	S	A	M	L	A	I	L	S	G	V	S	W	G	A	S	A	I	V	A	K	R	L	Y	A	R	H	P	R	V	D	L	L	S	L	T	S	W	Q	M	L	Y	A	A	L	V	M	S	V	V	A	L	L	V	P	Q	R	E	I	D	W	Q	P	T	V	F	W	A	L	A	Y
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.
Template Sequence		I	V	G	P	V	G	A	F	V	I	G	L	L	G	G	A	I	S	V	V	G	F	V	F	I	Q	P	M	L	E	S	K	A	K	T	I	D	T	C	G	V	H	N	L	H	G	L	P	G	L	L	G	G	F	S	A	I	L	I	V	.	.	.	.	.	.	.	.	P	G	I	A	V	A	Q	L	T	G	I	G
Template Known Secondary structure		T	S																						T									S					T	T						T	T														S	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.									340	.	.	.	.	.	.	.	.	.	350	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	I	L	A	T	A	L	A	W	S	L	W	L	F	V	L	K	N	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	L	A	L	A	L	I	G	G	V	I	A	G	A	L	I	K	L	T	G
Template Known Secondary structure																				T	T
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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