Job Description P0ABT8 Confidence 40.20% Date Thu Jan 5 11:16:21 GMT 2012 Rank 4 Aligned Residues 238 % Identity 11% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

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		4	.	.	.	.	.	10	.	.			.	.	.	.	.	.	.	20									.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70
Predicted Secondary structure											.	.									.	.	.	.	.	.	.	.																																														.	.	.
Query SS confidence											.	.									.	.	.	.	.	.	.	.																																														.	.	.
Query Sequence		A	G	K	S	N	P	L	A	I	.	.	S	G	L	V	V	L	T	L	.	.	.	.	.	.	.	.	I	W	S	Y	S	W	I	F	M	K	Q	V	T	S	Y	I	G	A	F	D	F	T	A	L	R	C	I	F	G	A	L	V	L	F	I	V	L	L	L	R	G	R	G	M	R	.	.	.	P	T	P	F	K
Query Conservation											.	.									.	.	.	.	.	.	.	.																																														.	.	.
Alig confidence											.	.									.	.	.	.	.	.	.	.				.																																										.	.	.
Template Conservation																																.
Template Sequence		A	E	R	A	K	V	S	S	F	I	L	L	S	A	L	W	L	T	F	V	Y	A	P	F	A	H	W	L	W	G	.	G	G	W	L	A	K	L	G	A	L	D	F	A	G	G	M	V	V	H	I	S	S	G	F	A	A	L	A	V	A	M	T	I	G	K	R	A	G	F	E	E	Y	S	I	E	P	H	S	I
Template Known Secondary structure		T	T	T	B																T										S	.	S						T	T				S	S		T	T	T	T																			T	T	T	T	T	S					S
Template Predicted Secondary structure																																.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		Y	T	L	A	I	A	L	L	Q	T	C	G	M	V	G	L	A	Q	.	.	W	A	L	V	S	G	G	A	G	K	V	A	I	L	S	Y	T	M	P	F	W	V	V	I	F	A	A	L	F	L	G	E	R	L	R	R	G	Q	Y	F	A	I	L	I	A	A	F	G	L	F	L	V	L	Q	P	W	Q	L	D	F
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		P	L	T	L	I	G	A	A	L	L	W	F	G	W	F	G	F	N	G	G	S	A	L	A	A	N	D	V	A	I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	G	K	P	G	S	L	G	I	V	S	G	A	I	A	G	L	A	A	I	T	P	A	A	G	F	V
Template Known Secondary structure																					G	G	G	S	S	S	S																													S																			T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.							.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.
Query Sequence		S	S	M	K	S	A	M	L	A	I	L	S	G	V	S	W	G	A	S	A	I	V	A	K	R	L	Y	A	R	H	P	R	V	D	L	L	S	L	T	S	W	Q	M	L	Y	A	A	L	V	M	S	V	V	A	L	L	V	P	Q	R	E	I	D	W	Q	.	.	.	.	.	.	P	T	V	F	W	A	L	A	Y
Query Conservation																																																																			.	.	.	.	.	.
Alig confidence																												.																																							.	.	.	.	.	.
Template Conservation																												.
Template Sequence		D	V	K	G	A	I	V	I	G	L	V	A	G	I	V	C	Y	L	A	M	D	F	R	I	K	K	.	K	I	D	E	S	L	D	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A	G	L	L	F	G	N	P	Q	L	L	V	S	Q	L	I	A	V	A
Template Known Secondary structure																											T	.	T				T	T																											S				G	G	G	T
Template Predicted Secondary structure																												.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	I	L	A	T	A	L	A	W	S	L	W	L	F	V	L	K	N	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	T	T	A	Y	A	F	L	V	T	L	I	L	A	K	A	V	D	A	A	V
Template Known Secondary structure																						T
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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