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Job DescriptionP21507
Confidence100.00%DateWed Jan 25 15:20:41 GMT 2012
Rank41Aligned Residues397
% Identity17%Templatec1tf2A_
PDB info PDB header:protein transportChain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40.........50.........60.........70.........80.........90....
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Query Sequence  LLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSD
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Template Sequence  VREASRRVTGMFPFKVQLMGGVALHDGN. . IAEMKTGEGKTLTSTLPVY. . . . . . . LNALTGKGVHVVTVNEYLASRDAE
Template Known Secondary structure  S



TTS..

TTS
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   6970.........80.........90...... ...100.........110..... ....120.........130.........
 
   95....100.........110.........120.........130....... ..140.........150.........160...
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Query Sequence  HARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL. . . . . . . LQYIKEENFDCRAVETLILDEADRML. . . .
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Template Sequence  QMGKIFEFLGLTVGLNLNSMSKDEKREAYA. . ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA
Template Known Secondary structure  TT



TT

TT..SSTT
SSGGG






TTTST
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   140.........150.........160......... 170.........180.........190.........200.........210.......
 
   164.....170.........180.
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Query Sequence  . . . . . . . . . . . . DMGFAQDIEHIAGETRWR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAH
Template Known Secondary structure  T

SS



TT

SSSS
SSS


TT
S
SSSGGG
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   218.220.........230.........240.........250.........260.........270.........280.........290.......
 
   182.......190.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KQTLLFSATLEGDA
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Template Sequence  VAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTE
Template Known Secondary structure  T

BTTTTTB
TTT

B
TT


TTTTT







TTSSS

GGG
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   298.300.........310.........320.........330.........340.........350.........360.........370.......
 
   196...200.........210.........220.........230.........240.........250.........260.........270.....
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Query Sequence  IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINN
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Template Sequence  EEEFRNIYNMQVVTI. PTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPH
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SST

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   378.380.........390.. .......400.........410.........420.........430.........440.........450......
 
   276...280.........290.........300.........310.... .... .320.........330.........340.......
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Query Sequence  CYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDI. . . PDVS. . . . . HVFNFDMPRSGDTYLHRIGRTARAGRKGT
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Template Sequence  QVLNAKNHEREAQIIEEAGQKG. . AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI
Template Known Secondary structure 
SSSTSSSTT..
TTSSTT





TT
GGGTSSS

SSTTSS
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   457..460.........470........ .480.........490.........500.........510.........520.........530....
 
   348.350...... ...360.........370.........380.........390.........400.........410.........420
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Query Sequence  AISLVEAHD. . . . . . . HLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH
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Template Sequence  TQFYLSMEDELMRRFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYKQR
Template Known Secondary structure  TTSSGGGSST
BTTB
B

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   535....540.........550.........560.........570.........580.........590.........600.........610....
 
   421....
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Query Sequence  RDTKN
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Template Sequence  FEVID
Template Known Secondary structure  T
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   615....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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