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Job DescriptionP21507
Confidence99.97%DateWed Jan 25 15:20:41 GMT 2012
Rank53Aligned Residues269
% Identity16%Templatec1a1vA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  DGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNH
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Template Sequence  SFQVAHLHAPTGSGKSTKVPAAYA. . . . . . . . . . AQGYKVLVLNPSVAATLGFGAYMSKAH. . . GVDPNIRTGV. . . . . .
Template Known Secondary structure  S


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   196...200.........210......... 220.........230.........240...... ...250......
 
   120.........130.........140.........150.........160.........170.........180.........190.........
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Query Sequence  AEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDF
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Template Sequence  . RTITTGSPITYSTYGKFLADGGS. . . . GGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATAT. . . . . . . .
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   257..260.........270......... 280.........290.........300.........310.........320...
 
   200.........210.........220.........230.........240.........250.........260.........270.........
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Query Sequence  AERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLE
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Template Sequence  . . . . . . . . . . . . PPGSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYY
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   325....330.........340.........350.........360.........370.........380.........390..
 
   280.........290.... .....300.........310.. .......320.........330.........340.........350
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Query Sequence  GEMVQGKRNEAIKRL. . . . . . . TEGRVNVLVATDVAARGI. . DIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS
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Template Sequence  RGLDVSVIPTSGDVVVVATDALFTGDFDSVIDCNTVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR. GKPGIYRF
Template Known Secondary structure  TTS
GGGS
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   393......400.........410.........420.........430.........440.........450.........460... ......470.
 
   351..
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Query Sequence  LVE
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Template Sequence  VAP
Template Known Secondary structure  S
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   476..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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