Job Description P77252 Confidence 90.97% Date Thu Jan 5 12:26:51 GMT 2012 Rank 3 Aligned Residues 215 % Identity 9% Template c3s81A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:putative aspartate racemase; PDBTitle: crystal structure of putative aspartate racemase from salmonella2 typhimurium Resolution 1.80 Å

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		1	.			.	.	.	.	.	.	.	10				.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.
Predicted Secondary structure				.	.									.	.	.																																																											.
Query SS confidence				.	.									.	.	.																																																											.
Query Sequence		M	N	.	.	V	N	F	F	V	T	C	I	.	.	.	G	D	A	L	K	S	R	M	A	R	D	S	V	L	L	L	E	K	L	G	C	R	V	N	F	P	E	K	Q	G	C	C	G	Q	P	A	I	N	S	G	Y	I	K	E	A	I	P	G	M	K	N	L	I	A	A	L	E	D	.	N	D	D	P	I	I
Query Conservation				.	.									.	.	.																																																											.
Alig confidence				.	.									.	.	.																																																											.
Template Conservation
Template Sequence		M	K	H	T	I	G	I	L	G	G	M	G	P	A	A	T	A	D	M	L	E	K	F	V	E	L	R	H	A	S	C	D	Q	Q	H	I	P	L	I	V	S	S	I	P	D	I	P	D	R	T	A	C	L	L	S	G	G	P	S	P	Y	R	Y	L	E	R	Y	L	H	M	L	E	D	A	G	A	E	C	I	V
Template Known Secondary structure												S	S															S			S	S	G	G	G	S									T	T	S														S														T	T		S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	A	G	S	C	T	Y	A	V	K	S	Y	P	T	Y	L	A	D	E	P	E	W	A	S	R	A	A	K	V	A	A	R	M	Q	D	L	T	S	F	I	V	N	K	L	G	V	V	D	V	G	A	S	L	Q	G	R	A	V	Y	H	P	S	C	S	L	A	R	K	L	G	V	K	D	E	P	L	T	L	L
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.													.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.													.
Template Sequence		I	P	C	N	T	A	H	Y	W	F	D	D	L	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	K	A	R	M	I	S	I	L	D	A	T	L	G	D	I	.	.	.	.	.	.	P	P	S	A	R	H	V	G	L	L	A	T	.	N	A	T	L	A	T	G	L	Y	Q	K	K	A	L	A	R
Template Known Secondary structure			S		S	G	G	G	G	G							.	.	.	.	.	.	.	.	.	.	.	.	.			S	S												T	S	.	.	.	.	.	.		T	T										.						T	T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.													.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.														.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.							.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	V	R	G	L	E	L	L	T	F	A	E	Q	D	T	C	C	G	F	G	G	T	F	S	V	K	M	A	E	I	S	G	E	M	V	K	E	K	V	A	H	L	M	E	V	R	P	E	Y	L	I	G	A	D	V	S	C	L	L	N	I	S	G	R	L	Q	R	E	G	Q	K	V	K	V	M	H	I	A	E
Query Conservation
Alig confidence				.	.																																																					.	.
Template Conservation				.	.																																																					.	.
Template Sequence		G	L	.	.	T	L	I	Q	P	E	D	A	G	Q	A	L	V	M	Q	A	I	Y	T	L	K	R	G	D	K	T	A	A	Q	A	L	L	L	P	Q	I	D	S	L	I	A	R	G	A	Q	A	I	I	M	G	C	T	.	.	E	I	P	L	I	V	A	G	H	E	R	A	I	A	C	P	M	I	D	S	T	A
Template Known Secondary structure		T		.	.																						T	T																			T	T		S						S	T	.	.	T						T	T	T	G	G	G	S	S	S
Template Predicted Secondary structure				.	.																																																					.	.
Template SS confidence
		141	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		235	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	M	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	V	R	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions