Job Description P77252 Confidence 99.89% Date Thu Jan 5 12:26:51 GMT 2012 Rank 1 Aligned Residues 220 % Identity 11% Template c3kwlA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein from helicobacter pylori Resolution 1.94 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	F	V	T	C	I	G	D	A	L	K	S	R	M	A	R	D	S	V	L	L	L	E	K	L	G	C	R	V	N	F	P	E	K	Q	G	C	C	G	Q	P	A	I	N	S	G	Y	I	K	E	A	I	P	G	M	K	N	L	I	A	A	L	E	D	N	D	D	P	I	I	S	P	A	G	S	C	T	Y	A
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		A	L	F	N	A	Y	A	K	H	L	D	V	Q	S	L	L	K	S	A	K	L	Y	L	E	K	X	G	Q	K	T	I	D	L	P	F	C	Y	.	D	G	G	Y	Y	G	K	I	I	S	T	H	D	F	L	T	A	S	A	Y	N	L	A	L	A	K	A	N	G	V	S	L	I	F	C	E	E	D	A	Y	L	N
Template Known Secondary structure									T	T	S																T	T											.			T	T	T																							T	T							S
Template Predicted Secondary structure																																							.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.											.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.
Query Sequence		V	K	S	Y	P	T	Y	L	A	D	E	P	E	W	A	S	R	A	A	K	.	.	.	.	.	.	.	.	.	.	V	A	A	R	M	Q	D	L	T	S	F	I	V	N	K	L	G	V	V	D	V	G	A	S	L	Q	G	R	A	V	Y	H	P	S	C	S	L	A	R	K	L	G	V	K	D	E	P	L	T	L
Query Conservation																						.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.
Template Sequence		I	L	H	A	K	E	V	L	D	N	N	P	E	I	I	N	S	V	N	E	K	L	K	K	Y	Q	L	V	Y	E	K	D	I	E	I	V	Y	L	N	E	W	V	N	E	F	L	A	W	E	L	K	S	P	F	D	A	F	V	G	A	E	F	S	R	I	K	Q	S	.	.	.	.	.	.	.	.	.	D	H	F
Template Known Secondary structure										T	T													G	G	G	T					S																	S				S			T	T		B						S	S				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.										.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.								.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.
Query Sequence		L	K	N	V	R	G	L	E	L	L	T	F	A	E	Q	D	T	C	C	G	F	G	G	T	F	S	V	K	M	A	E	I	S	G	E	M	V	K	E	K	V	A	H	L	M	E	V	R	P	E	Y	L	I	G	A	D	V	S	C	L	L	N	I	S	G	R	L	Q	.	.	.	.	.	.	.	R	E	G	Q	K
Query Conservation																																																																						.	.	.	.	.	.	.
Alig confidence						.																				.	.	.																																										.	.	.	.	.	.	.
Template Conservation						.																				.	.	.
Template Sequence		F	N	K	I	.	H	L	K	A	P	H	F	L	E	S	F	Q	N	Y	A	P	L	L	E	.	.	.	V	N	E	A	S	G	L	L	Q	C	A	H	L	R	Y	L	G	I	D	L	G	A	D	F	L	I	A	H	S	L	G	L	F	Y	A	F	E	N	L	S	L	K	A	S	K	I	Y	K	R	D	N	D	N
Template Known Secondary structure						.	T		B					G	G	G	G				G	G	G	G	G	.	.	.	T																			T	T		S					S									T	T	T						T	T	S		S
Template Predicted Secondary structure						.																				.	.	.
Template SS confidence
		386	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.				.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		227	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	V	M	H	I	A	E	V	L	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	T	L	F	L	P	Q	I	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions