Job Description P0CB39 Confidence 100.00% Date Thu Jan 5 11:30:09 GMT 2012 Rank 3 Aligned Residues 329 % Identity 18% Template c3lxqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a Resolution 1.95 Å

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		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	Y	R	Q	Q	L	N	S	L	T	K	L	L	N	E	N	N	A	L	P	P	L	A	N	F	K	D	E	S	G	N	E	P	R	T	L	V	L	V	I	G	E	S	T	Q	R	G	R	M	S	L	Y	G	Y	P	R	E	T	T	P	E	L	D	A	L	H	K	T	D	P	N	L	T	V	F	N	N	V	V
Query Conservation
Alig confidence																																																								.																.	.	.
Template Conservation																																																								.																.	.	.
Template Sequence		K	X	L	D	L	V	R	A	S	S	T	K	I	D	F	D	P	T	L	L	P	T	X	N	S	N	P	A	T	Y	Q	G	K	R	K	N	L	V	I	L	L	Q	E	S	L	G	A	Q	F	V	G	S	L	G	.	G	L	P	L	T	P	N	L	D	E	L	X	Q	E	G	.	.	.	W	Q	F	T	Q	X	Y
Template Known Secondary structure														S		B		T	T	T	S	T	T							S			S	S										T	T			G	G	G		G	G	G	T	.	S		S										T	T	S	.	.	.				T	T
Template Predicted Secondary structure																																																								.																.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.								.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340				.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.																																		.	.	.
Query SS confidence																											.	.	.	.	.	.	.																																		.	.	.
Query Sequence		T	S	R	P	Y	T	I	E	I	L	Q	Q	A	L	T	F	A	N	E	K	N	P	D	L	Y	.	.	.	.	.	.	.	L	T	Q	P	S	L	M	N	M	M	K	Q	A	G	Y	K	T	F	W	I	T	N	Q	Q	T	M	T	A	R	N	T	M	L	.	.	.	T	V	F	S	R	Q	T	D	K	Q	Y	Y
Query Conservation																											.	.	.	.	.	.	.																																		.	.	.
Alig confidence																											.	.	.	.	.	.	.																																		.	.	.
Template Conservation
Template Sequence		A	T	G	T	R	S	V	R	G	I	E	A	V	T	T	G	F	P	P	S	P	S	R	A	V	V	K	L	S	K	S	Q	T	G	F	F	T	I	A	D	L	L	K	E	Q	G	Y	H	T	Q	F	I	Y	G	G	E	A	N	F	D	N	X	K	T	F	F	F	G	N	G	F	D	Q	I	V	E	E	K	N	Y
Template Known Secondary structure			S		S	S																S	S			T	T	T		G	G	G	S	S	S	B										T	T								S	S		T	T	G	G	G								T	T							G	G	G
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.				.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.
Query SS confidence																												.	.	.
Query Sequence		M	N	Q	Q	R	T	Q	S	A	R	E	Y	D	T	N	V	L	K	P	F	Q	E	V	L	N	D	.	.	.	P	A	P	K	K	L	I	I	V	H	L	L	G	T	H	I	K	Y	K	Y	R	Y	P	E	N	Q	G	K	F	D	G	N	T	D	H	V	P	P	G	L	N	A	E	E	L	E	S	Y	N	D	Y
Query Conservation																												.	.	.
Alig confidence																												.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	P	G	F	V	G	S	W	G	V	S	D	E	D	L	Y	N	K	A	D	E	E	F	E	R	L	S	K	G	D	K	P	F	F	S	L	V	F	T	S	S	N	H	S	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	P	E	G	K	I	E	Q	Y	D	S	E	H	X	T	R
Template Known Secondary structure		S	S		S				T	T																				T	S	S	S										S	S	S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S	S			S	S	S	S	S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.																	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.			.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		D	N	A	N	L	Y	N	D	H	V	V	A	S	L	I	K	D	F	K	A	A	N	.	.	P	N	G	F	L	V	Y	F	S	D	H	G	E	E	V	Y	D	T	P	P	H	K	T	Q	G	R	N	E	D	N	P	T	R	H	M	Y	T	I	P	F	L	L	W	T	S	E	K	W	Q	A	T	H	P	R	D	F
Query Conservation																								.	.
Alig confidence																								.	.																		.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		N	N	A	V	K	Y	S	D	Y	A	L	G	T	F	F	D	K	A	K	K	S	S	Y	W	D	D	T	I	F	I	V	I	A	D	H	D	A	R	V	F	G	.	.	.	.	.	.	.	.	.	.	A	N	L	V	P	V	K	H	F	H	I	P	A	L	I	I	G	K	.	.	.	.	.	.	.	.	D	I	Q
Template Known Secondary structure																				T	T	S	S	S	G	G	G								S			S				S	.	.	.	.	.	.	.	.	.	.		S	S			G	G	G	T								S	T	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.											.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.									530	.	.
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	D	V	D	R	K	Y	S	L	A	E	L	I	H	T	W	S	D	L	A	G	L	S	Y	D	G	Y	D	P	T	R	S	V	V	N	P	Q	F	K	E	T	T	R	W	I	G	N	P	Y	K	K	N	A	L	I	D	Y	D	T	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	R	K	D	D	R	I	A	N	N	I	D	X	P	P	T	L	L	S	L	I	G	V	D	A	K	T	P	X	I	G	R	D	L	T	K	P	L	A	R	E	D	E	R	A	X	X	Q	Y	D	K	N	F	G	Y	L	T	R	D	N	L	V
Template Known Secondary structure											G	G	G										T									S			T	T	S				G	G	G								T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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