Job Description P0CB39 Confidence 44.89% Date Thu Jan 5 11:30:09 GMT 2012 Rank 39 Aligned Residues 85 % Identity 19% Template c3bd0D_ PDB info PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii Resolution 3.01 Å

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		360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		S	A	R	E	Y	D	.	T	N	V	L	K	P	F	Q	E	V	L	N	D	P	A	P	K	K	L	I	I	V	H	L	L	G	T	H	I	K	Y	K	Y	R	Y	P	E	N	Q	G	K	F	D	G	N	T	D	H	V	P	P	G	L	N	A	E	E	L	E	S	Y	N	D	Y	D	N	A	N	L	Y	N	D	H
Query Conservation								.
Alig confidence								.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	W	Y	T	A	S	G	P	Q	L	N	A	Q	L	E	G	W	L	S	Q	V	Q	S	T	K	R	P	A	R	A	I	I	A	P	H	A	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	C	G	S
Template Known Secondary structure		T	T	B		S															T	S				S		S		S							S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																																						.	.	.	.	.
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	A	S	L	I	K	D	F	K	A	A	N	P	N	G	F	L	V	Y	F	S	D	H	G	E	E	V	Y	D	T	P	P	H	K	T	Q	G	R	N	E	D	N	P	T	R	H	M	Y	T	I	P	F
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.
Template Sequence		C	A	A	H	A	Y	K	Q	V	D	P	S	I	T	R	R	I	F	I	L	G	P	S	H	.	.	.	.	.	.	.	.	.	.	H	V	P	L	S	R	C	A	L	S	S	V	D	I	Y	R	T	P	L
Template Known Secondary structure								T	T			T	T	T											S	.	.	.	.	.	.	.	.	.	.	S	S			S	S					S	S	S					S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.											.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions