Job Description P0CB39 Confidence 100.00% Date Thu Jan 5 11:30:09 GMT 2012 Rank 2 Aligned Residues 322 % Identity 15% Template c2w5tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. Resolution 1.60 Å

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		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	N	S	L	T	K	L	L	N	E	N	N	A	L	P	P	L	A	N	F	K	D	E	S	G	N	E	P	R	T	L	V	L	V	I	G	E	S	T	Q	R	G	R	M	S	L	Y	G	Y	P	R	E	T	T	P	E	L	D	A	L	H	K	T	D	P	N	L	T	V	F	N	N	V	V	T	S	R	P	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	D	D	L	T	K	V	L	N	Y	T	K	Q	R	Q	T	E	P	N	P	E	Y	Y	G	V	A	K	K	K	N	I	I	K	I	H	L	E	S	F	Q	T	F	L	I	N	K	K	V	N	G	K	E	V	T	P	F	L	N	K	L	S	S	G	K	E	Q	F	T	Y	F	P	N	F	F	H	Q	T	G	Q
Template Known Secondary structure													T	S	T	T						T	T	T	T	T	T	T	T	T									T	T			G	G	G	T	T				T	T			S	S								T	T		S	S					T	T							T
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		288	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.							.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.				.	.	350	.	.	.	.
Predicted Secondary structure								.	.															.	.	.	.	.	.											.																.																.	.	.
Query SS confidence								.	.															.	.	.	.	.	.											.																.																.	.	.
Query Sequence		T	I	E	I	L	Q	.	.	Q	A	L	T	F	A	N	E	K	N	P	D	L	Y	.	.	.	.	.	.	L	T	Q	P	S	L	M	N	M	M	.	K	Q	A	G	Y	K	T	F	W	I	T	N	Q	Q	T	.	M	T	A	R	N	T	M	L	T	V	F	S	R	Q	T	.	.	.	D	K	Q	Y	Y	M	N
Query Conservation								.	.															.	.	.	.	.	.											.																.																.	.	.
Alig confidence								.	.															.	.	.	.	.	.											.																.																.	.	.
Template Conservation
Template Sequence		G	K	T	S	D	S	E	F	T	M	D	N	S	L	Y	G	L	P	Q	G	S	A	F	S	L	K	G	D	N	T	Y	Q	S	L	P	A	I	L	D	Q	K	Q	G	Y	K	S	D	V	M	H	G	D	Y	K	T	F	W	N	R	D	Q	V	Y	K	H	F	G	I	D	K	F	Y	D	A	T	Y	Y	D	M	S
Template Known Secondary structure		T	T											S					S	S	S						S	T	T	S																						S	S		T	T	G	G	G									T							G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	R	T	Q	S	A	R	E	Y	D	T	N	V	L	K	P	F	Q	E	V	L	N	D	P	A	P	K	K	L	I	I	V	H	L	L	G	T	H	I	K	Y	K	Y	R	Y	P	E	N	Q	G	K	F	D	G	N	T	D	H	V	P	P	G	L	N	A	E	E	L	E	S	Y	N	D	Y	D	N	A	N	L
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	K	N	V	V	N	L	G	L	K	D	K	I	F	F	K	D	S	A	N	Y	Q	A	K	M	K	S	P	F	Y	S	H	L	I	T	L	T	N	H	Y	P	F	T	L	.	.	.	.	.	.	.	.	.	.	.	D	E	K	D	A	T	I	E	K	S	N	T	G	D	A	T	V	D	G	Y	I	Q	T	A	R
Template Known Secondary structure		G	G	G			T	T																	T	S		S	S									S	S		T	T				.	.	.	.	.	.	.	.	.	.	.		G	G	G			S					S	S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.												.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.			.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.				.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.																								.	.	.
Query SS confidence																			.	.																								.	.	.
Query Sequence		Y	N	D	H	V	V	A	S	L	I	K	D	F	K	A	A	N	.	.	P	N	G	F	L	V	Y	F	S	D	H	G	E	E	V	Y	D	T	P	P	H	K	T	.	.	.	Q	G	R	N	E	D	N	P	T	R	H	M	Y	T	I	P	F	L	L	W	T	S	E	K	W	Q	A	T	H	P	R	D	F	S	Q
Query Conservation																			.	.																								.	.	.
Alig confidence																			.	.																								.	.	.																							.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.
Template Sequence		Y	L	D	E	A	L	E	E	Y	I	N	D	L	K	K	K	G	L	Y	D	N	S	V	I	M	I	Y	G	D	H	Y	G	I	S	E	N	H	N	N	A	M	E	K	L	L	G	E	K	I	T	P	A	K	F	T	D	L	N	R	T	G	F	W	I	K	I	P	.	.	.	.	.	.	.	.	G	K	S	G	G
Template Known Secondary structure																		T		S	T	T	S								S		S	S		G	G	G									T	S										T	T	B								T	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.									.	.	.	.	.
		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.		.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		D	V	D	R	K	Y	S	L	A	E	L	I	H	T	W	S	D	L	A	G	L	S	Y	D	G	Y	D	P	.	T	R	S	V	V	N	P	Q	F	K	E
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		I	N	N	E	Y	A	G	Q	V	D	V	M	P	T	I	L	H	L	A	G	I	D	T	K	N	Y	L	M	F	G	T	D	L	F	S	K	G	H	N	Q
Template Known Secondary structure									G	G	G										T				T	T	S			S				T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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