Job Description P31827 Confidence 1.94% Date Thu Jan 5 11:48:51 GMT 2012 Rank 66 Aligned Residues 125 % Identity 12% Template c3nb3C_ PDB info PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Resolution 19.00 Å

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		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.							.	.	.	690	.
Predicted Secondary structure																																																																							.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.
Query Sequence		Q	V	D	I	N	P	Q	I	V	F	S	Y	I	K	S	K	G	N	L	S	L	N	N	G	Y	E	E	S	N	T	G	D	N	Q	V	V	Y	N	G	N	L	V	S	Y	D	S	V	P	V	A	D	F	N	N	P	L	K	I	S	L	N	M	D	F	T	H	Q	P	S	.	.	.	.	.	.	G	L	V	W	A
Query Conservation																																																																							.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	W	Y	T	G	A	K	L	G	W	S	Q	H	E	N	K	L	G	A	G	A	F	G	G	Y	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	P	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	Y	A	Y	K	A	Q	G	V	Q	L	T
Template Known Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.																										.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
		692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	L	A	W	Q	E	A	R	K	A	R	I	I	L	G	K	T	N	A	Q	Y	I	S	E	Y	S	D	Y	K	Q	Y	V	D	E	K	L	D	S	S	L	T	W	D	T	R	L	S	W	T	P	Q	F	L	Q	Q	Q	N	L	T	I	S	A	D	I	L	N	V	L	D	S	K	T	A	V	D	T	T	N	T
Query Conservation
Alig confidence																																																					.	.	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.																	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	L	G	Y	P	I	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	Y	S	N	V	Y	G	K	N	H	D	T	G	V	S	P	V	F	A	G	G	V	E	Y	A	I	.	.	.	.	T	P	E	I	A	T	R	L	E	Y	Q	W	T	N	G	M	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	S	S	S																			S	S	S																					.	.	.	.		T	T														.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.																	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		772	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	A	T	Y	A	S	G	R	T	F	W	L	D	V	S	M	K	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												162	.	.	.	.	.	.	.	170

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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