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Job DescriptionP31827
Confidence100.00%DateThu Jan 5 11:48:51 GMT 2012
Rank14Aligned Residues552
% Identity14%Templatec3efmA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:ferric alcaligin siderophore receptor; PDBTitle: structure of the alcaligin outer membrane recepteur faua from2 bordetella pertussis
Resolution2.33 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30......... 40.........50.........60.........70.........80.........90..
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Query Sequence  QAVDDKNMYMHFFEEMTVYAPV. . . . . PVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQSTSLNQGDIRPE
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Template Sequence  EISDLTEGTNAYTTEAMSTATGLTLSPRETPQSVSVVTRQQIEDQ. . GLTDTGAILATAPGISVTRSDSNR. . . . . . . . Y
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TTS

SS
S
B
TTTSS
B
GGG
SS

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BTSTT

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   21........30.........40.........50.........60..... ....70.........80......... 90
 
   93......100.........110.........120.........130.........140.........150.........160 .........170.
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Query Sequence  KISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG. RFNGGVIDAKI
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Template Sequence  SFSARGFTIDN. . FQFDGLVSPILSQ. . . . . . . . . . . . . . WNYGSTDMDAAIYDHVEIVRGATGLMTGSGNPSAAVNFVR
Template Known Secondary structure  TT

..TT
SGG..............G
TTGGG
BGGGS


B

SS
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   91........100. ........110.... .....120.........130.........140.........150....
 
   172.......180.........190.........200.........210.........220.........230.........240.........250.
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Query Sequence  KRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQELADNFGVTAGLSRRQSDITR
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Template Sequence  KRPLREFAATFNASVGSWDYVRGDADISVPITEDGRIRSRLVAAYSQGDLDTRRRTFYGVVSADLTPDTVLTT. . . . . . .
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SS
TTTSSSSSS


TT.......
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   155....160.........170.........180.........190.........200.........210.........220.......
 
   252.......260.........270.........280.........290.........300.........310.........320.........330.
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Query Sequence  ADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGLAWDMDTQLAWA
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Template Conservation  .....................................................................           
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SVEYQHNHSNG
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   233......240...
 
   332.......340.........350.........360.........370.........380.........390.........400.........410.
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Query Sequence  KLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGNVSHQPYFGAEYIY
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Template Conservation                                                                                  
Template Sequence  PWARQDTEATTYFVDLTHRFTNDWKLRAAYSHTDGRYLMKHVFSNYDGNLDRDDIHFSLSAPFEAFGLRHEVALGWMSID
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TTS


TT
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   257..260.........270.........280.........290.........300.........310.........320.........330......
 
   412.......420.........430.........440.........450.........460. ........470.........480..
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Query Sequence  SDAWTERHNQSESYVINAAGKKTNHTIYHKGKGRLGIDNYTLYMADRISW. RNVSLMPGVRYDYDNYLSNHN. . . . . . . .
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Template Sequence  NHSDIQRYAMTLSPADD. . . . . . . . . . . . . . . . . VRTKQTGAYLVGRFALAEPLHLIVGDRWSDWKTKQMYFGSRREYRI
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S.................TTTT
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   339340.........350..... ....360.........370.........380.........390.........400.
 
   483......490.........500.........510.........520.........530.........540.........550.........560.
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Query Sequence  . ISPRFMTEWDIFANQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQDLKTPYNDELAMGLQQKIGKNV
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Template Sequence  KNQFTPYAGLTYDINDTYTAYASYTEIFQPQNARDT. . . . . . . . . . . . . . . . . . . SGGILPPIKSKSYELGLKAAYLEGR
Template Known Secondary structure 
SSS



B
S...................SS
B


GGGT
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   417..420.........430.........440.........450.. .......460.........470.......
 
   562 .......570.........580.........590.........600.........610.........620.........630.........640
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Query Sequence  I. ARANYVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFSLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNN
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Template Sequence  LNTSAALFQTRQDNLAQVIPGSSIPGFPNMQASRAASGAKVEGIDLEASGQILPD. . . . . WNIGASYTHFTTK. . . . . . .
Template Known Secondary structure  S
TT


TTSSSS




TT............
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   478.480.........490.........500.........510.........520.........530.. .......540.....
 
   641........650.........660.........670.........680.... .....690.........700.........710........
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Query Sequence  GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQ. . PSGLVWANTLAWQEARKARIILGKTNAQYISEYS
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Template Sequence  . . . . . . . . . . . . . . . . . . . DASGNPINTNHPRSLFKLYTTYRLPGALHRLTVGGGVDWQSRM. . . . . . . . . . . . . . . . . .
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TTS
B


SS
S
SSTTTT

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   546...550.........560.........570.........580........
 
   719720.........730.........740.........750.........760.........
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Query Sequence  DYKQYVDEKLDSSLTWDTRLSWTPQFLQQQNLTISADILNVLDSKTAVDTT
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Template Sequence  . . . . . . . . . QDSYALVSLMARFDF. . . . NKKLSATLNVNNLRNVMLNLRAQ
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   594.....600........ .610.........620.........630.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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