Job Description P0AEB5 Confidence 100.00% Date Thu Jan 5 11:22:57 GMT 2012 Rank 1 Aligned Residues 253 % Identity 22% Template c2vv5D_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs Resolution 3.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		G	V	I	D	F	I	C	T	S	L	I	A	V	I	L	T	I	K	L	F	L	L	I	N	Q	F	E	K	Q	Q	I	K	K	G	.	R	D	I	T	S	A	R	I	M	S	R	I	I	K	I	T	I	I	V	V	L	V	L	L	Y	G	E	H	F	G	M	S	L	S	G	L	L	T	F	G	G	I	G	G	L
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		S	Y	A	V	N	I	V	A	A	L	A	I	I	I	V	G	L	I	I	A	R	M	I	S	N	A	V	N	R	L	M	I	S	R	K	I	D	A	T	V	A	D	F	L	S	A	L	V	R	Y	G	I	I	A	F	T	L	I	A	A	L	G	R	V	G	V	Q	T	A	S	V	I	A	V	L	G	A	A	G	L
Template Known Secondary structure		G	G	G	S																																S																											T	T	T			S	T	T
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	M	A	G	K	D	I	L	S	N	F	F	S	G	I	M	L	Y	F	D	R	P	F	S	I	G	D	W	I	R	S	P	D	R	N	I	E	G	T	V	A	E	I	G	W	R	I	T	K	I	T	T	F	D	N	R	P	L	Y	V	P	N	S	L	F	S	S	I	S	V	E	N	P	G	R	M	T	N
Query Conservation
Alig confidence																																					.	.
Template Conservation																																					.	.
Template Sequence		V	V	G	L	A	L	Q	G	S	L	S	N	L	A	A	G	V	L	L	V	M	F	R	P	F	R	A	G	E	Y	V	D	L	G	G	.	.	V	A	G	T	V	L	S	V	Q	I	F	S	T	T	M	R	T	A	D	G	K	I	I	V	I	P	N	G	K	I	I	A	G	N	I	I	N	F	S	R	E	P	V
Template Known Secondary structure								T														T	T		S	S		T	T					S	S	S	.	.										S	S							T	T	S												T	S					S	S	S	S	S
Template Predicted Secondary structure																																					.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	I	T	T	T	I	G	L	R	Y	E	D	A	A	K	V	G	V	I	V	E	A	V	R	E	M	L	K	N	H	P	A	I	D	Q	R	Q	T	L	L	V	Y	F	N	Q	F	A	D	S	S	L	N	I	M	V	Y	C	F	T	K	T	T	V	W	A	E	W	L	A	A	Q	Q	D	V	Y	L	K	I	I
Query Conservation
Alig confidence														.	.																																																			.	.	.
Template Conservation														.	.																																																			.	.	.
Template Sequence		R	R	N	E	F	I	I	G	V	A	Y	D	.	.	S	D	I	D	Q	V	K	Q	I	L	T	N	I	I	Q	S	E	D	R	I	L	K	D	R	E	M	T	V	R	L	N	E	L	G	A	S	S	I	N	F	V	V	R	V	W	S	N	S	G	D	.	.	.	L	Q	N	V	Y	W	D	V	L	E	R	I	K
Template Known Secondary structure												T	T	.	.	S																	T	T	B		T	T	S											S	S	S											T	T	T	.	.	.
Template Predicted Secondary structure														.	.																																																			.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	V	Q	S	H	G	A	D	F	A	F	P	S	Q	T	L	Y	M	D	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	F	D	A	A	G	I	S	F	P	Y	P	Q	M	D	V	N	F	K	R
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions