Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	V	I	L	L	D	K	V	A	N	L	G	S	L	G	D	Q	V	N	V	K	A	G	Y	A	R	N	F	L	V	P	Q	G	K	A	V	P	A	T	K	K	N	I	E	F	F	E	A	R	R	A	E	L	E	A	K	L	A	E
Secondary structure
SS confidence
Disorder		?	?				?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	L	A	A	A	N	A	R	A	E	K	I	N	A	L	E	T	V	T	I	A	S	K	A	G	D	E	G	K	L	F	G	S	I	G	T	R	D	I	A	D	A	V	T	A	A	G	V	E	V	A	K	S	E	V	R	L	P	N	G
Secondary structure
SS confidence
Disorder													?			?	?	?									?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Sequence		V	L	R	T	T	G	E	H	E	V	S	F	Q	V	H	S	E	V	F	A	K	V	I	V	N	V	V	A	E
Secondary structure
SS confidence
Disorder																													?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qbc chain H Region: 1 - 149 Aligned: 149 Modelled: 149 Confidence: 100.0% Identity: 100% PDB header:ribosome Chain: H: PDB Molecule:50s ribosomal protein l9; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with gentamicin. this file3 contains the 50s subunit of the second 70s ribosome, with4 gentamicin bound. the entire crystal structure contains5 two 70s ribosomes and is described in remark 400. Phyre2 PDB 2b66 chain I Region: 1 - 149 Aligned: 146 Modelled: 146 Confidence: 100.0% Identity: 40% PDB header:ribosome Chain: I: PDB Molecule:50s ribosomal protein l9; PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400 Phyre2 PDB 2v49 chain I Region: 1 - 147 Aligned: 144 Modelled: 147 Confidence: 100.0% Identity: 41% PDB header:ribosome Chain: I: PDB Molecule:50s ribosomal protein l9; PDBTitle: structure of the ribosome recycling factor bound to the2 thermus thermophilus 70s ribosome with mrna, asl-phe and3 trna-fmet (part 4 of 4). this file contains the 50s4 subunit of molecule 2. Phyre2 PDB 3bbo chain J Region: 2 - 149 Aligned: 146 Modelled: 148 Confidence: 100.0% Identity: 32% PDB header:ribosome Chain: J: PDB Molecule:ribosomal protein l9; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome Phyre2 PDB 2gyc chain F domain 1 Region: 59 - 149 Aligned: 91 Modelled: 91 Confidence: 99.9% Identity: 100% Fold: Ribosomal protein L9 C-domain Superfamily: Ribosomal protein L9 C-domain Family: Ribosomal protein L9 C-domain Phyre2 PDB 1div chain A domain 1 Region: 57 - 149 Aligned: 91 Modelled: 93 Confidence: 99.9% Identity: 38% Fold: Ribosomal protein L9 C-domain Superfamily: Ribosomal protein L9 C-domain Family: Ribosomal protein L9 C-domain Phyre2 PDB 2gyc chain F domain 2 Region: 1 - 57 Aligned: 57 Modelled: 57 Confidence: 99.8% Identity: 100% Fold: MbtH/L9 domain-like Superfamily: L9 N-domain-like Family: Ribosomal protein L9 N-domain Phyre2 PDB 2j01 chain I domain 2 Region: 1 - 55 Aligned: 55 Modelled: 55 Confidence: 99.8% Identity: 51% Fold: MbtH/L9 domain-like Superfamily: L9 N-domain-like Family: Ribosomal protein L9 N-domain Phyre2 PDB 2hba chain A domain 1 Region: 1 - 51 Aligned: 51 Modelled: 51 Confidence: 99.8% Identity: 45% Fold: MbtH/L9 domain-like Superfamily: L9 N-domain-like Family: Ribosomal protein L9 N-domain Phyre2 PDB 1cqu chain A Region: 1 - 51 Aligned: 51 Modelled: 51 Confidence: 99.8% Identity: 45% Fold: MbtH/L9 domain-like Superfamily: L9 N-domain-like Family: Ribosomal protein L9 N-domain Phyre2 PDB 1pny chain F Region: 1 - 52 Aligned: 51 Modelled: 52 Confidence: 99.8% Identity: 55% PDB header:ribosome Chain: F: PDB Molecule:50s ribosomal protein l9; PDBTitle: crystal structure of the wild type ribosome from e. coli,2 50s subunit of 70s ribosome. this file, 1pny, contains3 only molecules of the 50s ribosomal subunit. the 30s4 subunit is in the pdb file 1pnx. Phyre2 PDB 1sm1 chain F Region: 1 - 52 Aligned: 51 Modelled: 52 Confidence: 99.8% Identity: 55% PDB header:ribosome/antibiotic Chain: F: PDB Molecule:50s ribosomal protein l9; PDBTitle: complex of the large ribosomal subunit from deinococcus radiodurans2 with quinupristin and dalfopristin Phyre2 PDB 2j01 chain I domain 1 Region: 57 - 147 Aligned: 88 Modelled: 91 Confidence: 99.8% Identity: 35% Fold: Ribosomal protein L9 C-domain Superfamily: Ribosomal protein L9 C-domain Family: Ribosomal protein L9 C-domain Phyre2 PDB 3rbg chain B Region: 114 - 148 Aligned: 35 Modelled: 35 Confidence: 32.8% Identity: 26% PDB header:immune system Chain: B: PDB Molecule:cytotoxic and regulatory t-cell molecule; PDBTitle: crystal structure analysis of class-i mhc restricted t-cell associated2 molecule Phyre2 PDB 3ctu chain B Region: 84 - 113 Aligned: 30 Modelled: 30 Confidence: 31.7% Identity: 30% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cbs domain protein; PDBTitle: crystal structure of cbs domain protein from streptococcus2 pneumoniae tigr4 Phyre2 PDB 3ddj chain A Region: 84 - 106 Aligned: 23 Modelled: 23 Confidence: 30.4% Identity: 22% PDB header:amp-binding protein Chain: A: PDB Molecule:cbs domain-containing protein; PDBTitle: crystal structure of a cbs domain-containing protein in complex with2 amp (sso3205) from sulfolobus solfataricus at 1.80 a resolution Phyre2 PDB 3ddj chain A domain 1 Region: 84 - 106 Aligned: 23 Modelled: 23 Confidence: 30.2% Identity: 22% Fold: CBS-domain pair Superfamily: CBS-domain pair Family: CBS-domain pair Phyre2 PDB 1vr9 chain A domain 3 Region: 84 - 106 Aligned: 23 Modelled: 23 Confidence: 28.3% Identity: 26% Fold: CBS-domain pair Superfamily: CBS-domain pair Family: CBS-domain pair Phyre2 PDB 3lqn chain A Region: 84 - 106 Aligned: 23 Modelled: 23 Confidence: 26.4% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbs domain protein; PDBTitle: crystal structure of cbs domain-containing protein of2 unknown function from bacillus anthracis str. ames ancestor Phyre2 PDB 1o50 chain A domain 3 Region: 84 - 107 Aligned: 24 Modelled: 24 Confidence: 26.2% Identity: 17% Fold: CBS-domain pair Superfamily: CBS-domain pair Family: CBS-domain pair Phyre2 1 c2qbcH_ 2 c2b66I_ 3 c2v49I_ 4 c3bboJ_ 5 d2gycf1 6 d1diva1 7 d2gycf2 8 d2j01i2 9 d2hbaa1 10 d1cqua_ 11 c1pnyF_ 12 c1sm1F_ 13 d2j01i1 14 c3rbgB_ 15 c3ctuB_ 16 c3ddjA_ 17 d3ddja1 18 d1vr9a3 19 c3lqnA_ 20 d1o50a3 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qbcH_ 100.0 100 PDB header:ribosome Chain: H: PDB Molecule:50s ribosomal protein l9; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with gentamicin. this file3 contains the 50s subunit of the second 70s ribosome, with4 gentamicin bound. the entire crystal structure contains5 two 70s ribosomes and is described in remark 400. 2 c2b66I_ 100.0 40 PDB header:ribosome Chain: I: PDB Molecule:50s ribosomal protein l9; PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400 3 c2v49I_ 100.0 41 PDB header:ribosome Chain: I: PDB Molecule:50s ribosomal protein l9; PDBTitle: structure of the ribosome recycling factor bound to the2 thermus thermophilus 70s ribosome with mrna, asl-phe and3 trna-fmet (part 4 of 4). this file contains the 50s4 subunit of molecule 2. 4 c3bboJ_ 100.0 32 PDB header:ribosome Chain: J: PDB Molecule:ribosomal protein l9; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 5 d2gycf1 99.9 100 Fold:Ribosomal protein L9 C-domain Superfamily:Ribosomal protein L9 C-domain Family:Ribosomal protein L9 C-domain 6 d1diva1 99.9 38 Fold:Ribosomal protein L9 C-domain Superfamily:Ribosomal protein L9 C-domain Family:Ribosomal protein L9 C-domain 7 d2gycf2 99.8 100 Fold:MbtH/L9 domain-like Superfamily:L9 N-domain-like Family:Ribosomal protein L9 N-domain 8 d2j01i2 99.8 51 Fold:MbtH/L9 domain-like Superfamily:L9 N-domain-like Family:Ribosomal protein L9 N-domain 9 d2hbaa1 99.8 45 Fold:MbtH/L9 domain-like Superfamily:L9 N-domain-like Family:Ribosomal protein L9 N-domain 10 d1cqua_ 99.8 45 Fold:MbtH/L9 domain-like Superfamily:L9 N-domain-like Family:Ribosomal protein L9 N-domain 11 c1pnyF_ 99.8 55 PDB header:ribosome Chain: F: PDB Molecule:50s ribosomal protein l9; PDBTitle: crystal structure of the wild type ribosome from e. coli,2 50s subunit of 70s ribosome. this file, 1pny, contains3 only molecules of the 50s ribosomal subunit. the 30s4 subunit is in the pdb file 1pnx. 12 c1sm1F_ 99.8 55 PDB header:ribosome/antibiotic Chain: F: PDB Molecule:50s ribosomal protein l9; PDBTitle: complex of the large ribosomal subunit from deinococcus radiodurans2 with quinupristin and dalfopristin 13 d2j01i1 99.8 35 Fold:Ribosomal protein L9 C-domain Superfamily:Ribosomal protein L9 C-domain Family:Ribosomal protein L9 C-domain 14 c3rbgB_ 32.8 26 PDB header:immune system Chain: B: PDB Molecule:cytotoxic and regulatory t-cell molecule; PDBTitle: crystal structure analysis of class-i mhc restricted t-cell associated2 molecule 15 c3ctuB_ 31.7 30 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cbs domain protein; PDBTitle: crystal structure of cbs domain protein from streptococcus2 pneumoniae tigr4 16 c3ddjA_ 30.4 22 PDB header:amp-binding protein Chain: A: PDB Molecule:cbs domain-containing protein; PDBTitle: crystal structure of a cbs domain-containing protein in complex with2 amp (sso3205) from sulfolobus solfataricus at 1.80 a resolution 17 d3ddja1 30.2 22 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 18 d1vr9a3 28.3 26 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 19 c3lqnA_ 26.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbs domain protein; PDBTitle: crystal structure of cbs domain-containing protein of2 unknown function from bacillus anthracis str. ames ancestor 20 d1o50a3 26.2 17 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 21 c1vr9B_ not modelled 26.2 26 PDB header:unknown function Chain: B: PDB Molecule:cbs domain protein/act domain protein; PDBTitle: crystal structure of a cbs domain pair/act domain protein (tm0892)2 from thermotoga maritima at 1.70 a resolution 22 c3lhhA_ not modelled 25.4 30 PDB header:membrane protein Chain: A: PDB Molecule:cbs domain protein; PDBTitle: the crystal structure of cbs domain protein from shewanella2 oneidensis mr-1. 23 d2yzia1 not modelled 24.8 23 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 24 c3gbyA_ not modelled 23.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ct1051; PDBTitle: crystal structure of a protein with unknown function ct10512 from chlorobium tepidum 25 c3kpbA_ not modelled 23.6 20 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0100; PDBTitle: crystal structure of the cbs domain pair of protein mj01002 in complex with 5 -methylthioadenosine and s-adenosyl-l-3 methionine. 26 c2emqA_ not modelled 22.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical conserved protein; PDBTitle: hypothetical conserved protein (gk1048) from geobacillus kaustophilus 27 c2k50A_ not modelled 21.7 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:replication factor a related protein; PDBTitle: solution nmr structure of the replication factor a related2 protein from methanobacterium thermoautotrophicum.3 northeast structural genomics target tr91a. 28 d2v8qe1 not modelled 20.7 21 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 29 c2or7A_ not modelled 20.6 17 PDB header:immune system Chain: A: PDB Molecule:t-cell immunoglobulin and mucin domain- PDBTitle: tim-2 30 d2j9la1 not modelled 20.2 21 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 31 c3kxrA_ not modelled 20.1 26 PDB header:transport protein Chain: A: PDB Molecule:magnesium transporter, putative; PDBTitle: structure of the cystathionine beta-synthase pair domain of the2 putative mg2+ transporter so5017 from shewanella oneidensis mr-1. 32 c2p9mD_ not modelled 19.5 27 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0922; PDBTitle: crystal structure of conserved hypothetical protein mj0922 from2 methanocaldococcus jannaschii dsm 2661 33 d2ef7a1 not modelled 19.3 41 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 34 c3i8nB_ not modelled 19.1 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp2912; PDBTitle: a domain of a conserved functionally known protein from2 vibrio parahaemolyticus rimd 2210633. 35 c3nqrD_ not modelled 19.0 20 PDB header:transport protein Chain: D: PDB Molecule:magnesium and cobalt efflux protein corc; PDBTitle: a putative cbs domain-containing protein from salmonella typhimurium2 lt2 36 d2ooxe2 not modelled 18.5 25 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 37 c3fioB_ not modelled 17.7 28 PDB header:nucleotide binding protein, metal bindin Chain: B: PDB Molecule:a cystathionine beta-synthase domain protein PDBTitle: crystal structure of a fragment of a cystathionine beta-2 synthase domain protein fused to a zn-ribbon-like domain 38 d1yava3 not modelled 17.6 17 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 39 d1nksa_ not modelled 17.6 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 40 c2v8qE_ not modelled 17.5 21 PDB header:transferase Chain: E: PDB Molecule:5'-amp-activated protein kinase subunit gamma-1; PDBTitle: crystal structure of the regulatory fragment of mammalian2 ampk in complexes with amp 41 c3m45D_ not modelled 17.2 15 PDB header:cell adhesion Chain: D: PDB Molecule:cell adhesion molecule 2; PDBTitle: crystal structure of ig1 domain of mouse syncam 2 42 c2ouxB_ not modelled 16.2 23 PDB header:transport protein Chain: B: PDB Molecule:magnesium transporter; PDBTitle: crystal structure of the soluble part of a magnesium transporter 43 c3ocmA_ not modelled 16.2 25 PDB header:membrane protein Chain: A: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis 44 c2yvxD_ not modelled 16.1 30 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 45 c2o8kA_ not modelled 15.9 26 PDB header:transcription/dna Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element 46 c3lfrB_ not modelled 15.5 15 PDB header:transport protein Chain: B: PDB Molecule:putative metal ion transporter; PDBTitle: the crystal structure of a cbs domain from a putative metal2 ion transporter bound to amp from pseudomonas syringae to3 1.55a 47 c3e0eA_ not modelled 15.4 36 PDB header:replication Chain: A: PDB Molecule:replication protein a; PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b 48 c1yavB_ not modelled 14.6 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein bsu14130; PDBTitle: crystal structure of cbs domain-containing protein ykul2 from bacillus subtilis 49 c2p9rA_ not modelled 14.4 18 PDB header:signaling protein Chain: A: PDB Molecule:alpha-2-macroglobulin; PDBTitle: human alpha2-macroglogulin is composed of multiple domains,2 as predicted by homology with complement component c3 50 d1suxa_ not modelled 14.0 20 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 51 c3jtfB_ not modelled 13.9 15 PDB header:transport protein Chain: B: PDB Molecule:magnesium and cobalt efflux protein; PDBTitle: the cbs domain pair structure of a magnesium and cobalt efflux protein2 from bordetella parapertussis in complex with amp 52 d1zfja4 not modelled 13.7 29 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 53 d1jjcb1 not modelled 13.5 11 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 54 d1k1xa1 not modelled 13.1 43 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Families 57/38 glycoside transferase middle domain Family:4-alpha-glucanotransferase, domain 2 55 d1o7ia_ not modelled 12.9 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 56 c2pfiA_ not modelled 12.4 11 PDB header:transport protein Chain: A: PDB Molecule:chloride channel protein clc-ka; PDBTitle: crystal structure of the cytoplasmic domain of the human2 chloride channel clc-ka 57 c3ocoB_ not modelled 12.4 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hemolysin-like protein containing cbs domains; PDBTitle: the crystal structure of a hemolysin-like protein containing cbs2 domain of oenococcus oeni psu 58 d1ttja_ not modelled 12.3 25 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 59 c3hf7A_ not modelled 12.3 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cbs-domain protein; PDBTitle: the crystal structure of a cbs-domain pair with bound amp from2 klebsiella pneumoniae to 2.75a 60 c2yvzA_ not modelled 12.2 30 PDB header:transport protein Chain: A: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte cytosolic domain,2 mg2+-free form 61 d1nunb2 not modelled 12.1 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 62 c1z9mA_ not modelled 11.9 26 PDB header:cell adhesion Chain: A: PDB Molecule:gapa225; PDBTitle: crystal structure of nectin-like molecule-1 protein domain 1 63 d2d4za3 not modelled 11.9 25 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 64 c1x37A_ not modelled 11.8 25 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent protease la 1; PDBTitle: structure of bacillus subtilis lon protease ssd domain 65 c2auvA_ not modelled 11.6 11 PDB header:oxidoreductase Chain: A: PDB Molecule:potential nad-reducing hydrogenase subunit; PDBTitle: solution structure of hndac : a thioredoxin-like [2fe-2s]2 ferredoxin involved in the nadp-reducing hydrogenase3 complex 66 d2nyca1 not modelled 11.5 30 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 67 d1kv5a_ not modelled 11.5 25 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 68 d1dkga1 not modelled 11.4 22 Fold:Head domain of nucleotide exchange factor GrpE Superfamily:Head domain of nucleotide exchange factor GrpE Family:Head domain of nucleotide exchange factor GrpE 69 d1m55a_ not modelled 11.4 30 Fold:Origin of replication-binding domain, RBD-like Superfamily:Origin of replication-binding domain, RBD-like Family:Replication protein Rep, nuclease domain 70 d2riha1 not modelled 11.3 25 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 71 d1u2ca1 not modelled 11.2 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Cadherin-like Family:Dystroglycan, N-terminal domain 72 d2ouxa2 not modelled 10.8 23 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 73 c2qstB_ not modelled 10.7 14 PDB header:cell adhesion Chain: B: PDB Molecule:carcinoembryonic antigen-related cell adhesion PDBTitle: crystal structure of the v39c mutant of the n-terminal2 domain of carcinoembryonic antigen (cea) 74 d2p5ka1 not modelled 10.6 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 75 d2yzqa2 not modelled 10.5 25 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 76 d1b4aa1 not modelled 10.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 77 c2ds4A_ not modelled 10.4 19 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 45; PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45 78 d2yvxa2 not modelled 10.4 32 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 79 d1ixla_ not modelled 10.3 42 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:PaaI/YdiI-like 80 d2e9ia1 not modelled 10.1 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 81 d1qzma_ not modelled 10.1 38 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 82 d1ncna_ not modelled 9.9 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 83 c2dp3A_ not modelled 9.7 15 PDB header:isomerase Chain: A: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of a double mutant (c202a/a198v) of triosephosphate2 isomerase from giardia lamblia 84 c2ptvA_ not modelled 9.6 15 PDB header:immune system Chain: A: PDB Molecule:cd48 antigen; PDBTitle: structure of nk cell receptor ligand cd48 85 c3ocmB_ not modelled 9.5 25 PDB header:membrane protein Chain: B: PDB Molecule:putative membrane protein; PDBTitle: the crystal structure of a domain from a possible membrane protein of2 bordetella parapertussis 86 d1n55a_ not modelled 9.4 25 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 87 c2k75A_ not modelled 9.4 19 PDB header:dna binding protein Chain: A: PDB Molecule:uncharacterized protein ta0387; PDBTitle: solution nmr structure of the ob domain of ta0387 from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar80b. 88 d1m2da_ not modelled 9.3 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioredoxin-like 2Fe-2S ferredoxin 89 c2ednA_ not modelled 9.3 17 PDB header:contractile protein Chain: A: PDB Molecule:myosin-binding protein c, fast-type; PDBTitle: solution structure of the first ig-like domain from human2 myosin-binding protein c, fast-type 90 d1f9na1 not modelled 9.0 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Arginine repressor (ArgR), N-terminal DNA-binding domain 91 d1sw3a_ not modelled 8.9 20 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 92 d2b78a1 not modelled 8.9 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD) 93 d1mo0a_ not modelled 8.8 20 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 94 d2rc3a1 not modelled 8.8 28 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 95 c3rghA_ not modelled 8.7 15 PDB header:cell adhesion Chain: A: PDB Molecule:filamin-a; PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens 96 c2d4zB_ not modelled 8.6 25 PDB header:transport protein Chain: B: PDB Molecule:chloride channel protein; PDBTitle: crystal structure of the cytoplasmic domain of the chloride channel2 clc-0 97 d2btma_ not modelled 8.4 25 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 98 c3lv9A_ not modelled 8.2 20 PDB header:membrane protein Chain: A: PDB Molecule:putative transporter; PDBTitle: crystal structure of cbs domain of a putative transporter from2 clostridium difficile 630 99 c1s1i0_ not modelled 8.1 38 PDB header:ribosome Chain: 0: PDB Molecule:60s ribosomal protein l32; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0