|   |
3 | . | . | . | . | . | . | 10 | . | |
. | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
| . |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | R | K | V | A | I | I | G | S | . |
G | N | I | G | T | D | L | M | I | K | I | L | R | H | G | Q | H | L | E | M | A | V | M | V | G | I | D | P | Q | S | D | G | L | A | R | A | R | R | M | G | V | A | T | T | H | E | G | V | I | G | L | M | N | M | P | E | F | A | D | I | D | I | V | F | D | A | T | S | A | G |
Query Conservation |   |
|   |   |
|
|
|
|
|
| . |
|   |
|
|
|
|
|
|   |
|
|   |
|   |
|   |   |
|   |   |   |
|   |
|
|
|   |   |   |
|   |
|
|   |
|
|   |   |
|
|
|   |
|
|   |   |
|
|
|
|   |
|   |   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
|   |   | . |
|
|   |   |
|
|   |   |
|   |
|   |   |   |
|
|
|   |
|   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|
|   |   |
Template Sequence |   |
D | I | R | I | G | L | L | G | A | S | G | Y | T | G | A | E | I | V | R | L | L | A | N | . |
H | P | H | F | Q | V | T | L | M | T | A | D | R | K | A | G | Q | S | M | E | S | V | F | P | H | L | R | A | Q | K | L | P | T | L | V | . |
S | V | K | D | A | D | F | S | T | V | D | A | V | F | C | C | L | P | H | G |
Template Known Secondary structure |   |
|  |  |  |  |  |  | S |
| S | S |  |  |  |  |  |  |  |  |  |  |  | T | . |
| S | S |  |  |  |  |  |  |  |
| S | T | T |
| S | S | B | G | G | G | T |
| G | G | G | T | T | S |
|
|
| B |  |  | . |
| T | T | S |
|
| G | G | G |
| S |  |  |  |  |
|
|
| T | T |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | |
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
. | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | H | V | K | N | D | A | A | L | R | E | A | K | P | D | I | R | L | I | D | L | T | P | A | A | I | G | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Y | C | V | P | V | V | N | L | E | A | N | V | D | Q | L | N | V | N | M | V | T | C | G | G | Q | A | T | I | P |
Query Conservation |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |
|
|
|
|
|
|   |
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |
| . | . | . |   |   |
|   |   |
|
|
|
|
|   |
|
|
|
|   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |
|   |   |
| . | . | . |
|   |
|   |
|
|
|
|
|
|
|
|   |
|   |
Template Sequence |   |
T | T | Q | E | I | I | K | E | L | . |
. |
. |
P | T | A | L | K | I | V | D | L | S | A | D | F | R | L | R | N | I | A | E | Y | E | E | W | Y | G | Q | P | H | K | A | V | E | L | Q | K | E | V | V | Y | G | L | T | E | I | L | R | E | D | I | . |
. |
. |
K | K | A | R | L | V | A | N | P | G | N | L | V | K | G |
Template Known Secondary structure |   |
S | S |  |  |  |  |  | T | S | . | . | . |
| T | T |
|  |  |  |  |
| S | S | T | T | S |
|
|
|  |  |  |  |  |  |  |  | S | S |
|
| S |
|  |  |  |  | T | T |
|  |  |
|
|  |  |  |  |  |  |  |  | . | . | . |  | T |
| S |  |  |  |
|
|
|
|
| T | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  | . | . | . |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|  |  |  |  | . | . | . |
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
94 | . | . | . | . | . | 100 | . | . | |
|
|
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | |
|
|
. | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . |
  |
  |   |
139 | 140 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
M | V | A | A | V |
Query Conservation |   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|
Template Sequence |   |
A | S | G | Q | A |
Template Known Secondary structure |   |
T |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
  |   |
332 | . | . | . | . |
  |