 |
Job Description | P77580 | Confidence | 81.13% | Date | Thu Jan 5 12:30:45 GMT 2012 |
Rank | 345 | Aligned Residues | 83 |
% Identity | 24% | Template | c3k5pA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; |
PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis
|
Resolution | 2.15 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | S | K | R | K | V | A | I | I | G | S | G | N | I | G | T | D | L | M | I | K | I | L | R | H | G | Q | H | L | E | M | A | V | M | V | G | I | D | P | Q | S | D | G | L | A | R | A | R | R | M | G | V | A | T | T | H | E | G | V | I | G | L | M | N | M | P | E | F | A | D | I | D | I | V | F | D | A | T | S | A |
Query Conservation |   |
  |   |
|   |   |
|
|
|
|
|
|
|   |
|
|
|
|
|
|   |
|
|   |
|   |
|   |   |
|   |   |   |
|   |
|
|
|   |   |   |
|   |
|
|   |
|
|   |   |
|
|
|   |
|
|   |   |
|
|
|
|   |
|   |   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
|   |
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |   | . | . | . | . |
|
|
|   |
|   |   |
|
|   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|   | . | . | . | . | . |   |
|
|   |
|
|
|
|   |
| . |
Template Sequence |   |
V | R | G | K | T | L | G | I | V | G | Y | G | N | I | G | S | Q | V | G | N | L | A | E | S | . |
. |
. |
. |
L | G | M | T | V | R | Y | Y | D | T | S | D | K | L | . |
. |
. |
. |
. |
. |
Q | Y | G | N | V | K | P | A | A | S | L | D | E | L | L | K | . |
. |
. |
. |
. |
T | S | D | V | V | S | L | H | V | P | . |
Template Known Secondary structure |   |
S | T | T |
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | T | T |
|  |  |  |  |  |
| T | T |
|
|
| . | . | . | . | . | . |
| B | T | T | B |  |  |
| S | S |  |  |  |  |  |  | . | . | . | . | . |  |
| S |  |  |  |  |
|
|
| . |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  | . | . | . | . | . |  |
|
|  |  |  |  |
|
|
| . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | |
|
|
|
. | . | . | . | . | . | 180 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 210 | . | . | . | |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | A | H | V | K | N | D | A | A | L | R | E | A | K | P | D | I | R | L | I |
Query Conservation |   |
  |
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |   |   |
|
|   |   |   |   |
|   |   |
|
|   |
|
|   |
|
|
Template Sequence |   |
. |
S | K | L | I | T | E | A | K | L | R | K | M | K | K | G | A | F | L | I |
Template Known Secondary structure |   |
. |
|
|
| B |
|  |  |  |  |  |  | S |
| T | T |  |  |  |  |
Template Predicted Secondary structure |   |
. |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
214 | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|