Job Description P77580 Confidence 97.81% Date Thu Jan 5 12:30:45 GMT 2012 Rank 80 Aligned Residues 147 % Identity 20% Template c3hjaB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase from borrelia burgdorferi Resolution 2.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.								.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																															.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	V	A	I	I	G	S	G	N	I	G	T	D	L	M	I	K	I	L	R	H	G	Q	H	L	E	M	A	V	M	V	G	I	D	P	Q	S	D	G	L	A	R	A	R	.	.	.	.	.	.	.	R	M	G	V	A	T	T	H	E	G	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																															.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.											.										.											.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.											.										.
Template Sequence		M	K	L	A	I	N	G	F	G	R	I	G	R	.	N	V	F	K	I	A	F	E	R	G	.	I	D	I	V	A	I	N	D	L	.	T	D	P	K	T	L	A	H	L	L	K	Y	D	S	T	F	G	V	Y	N	K	K	V	E	S	R	D	G	A	I	V	V	D	G	R	E	I	K	I	I	A	E	R	D	P
Template Known Secondary structure										S					.									T	T	.									S	.	S													T	T	T				S	S						T	T					T	T									S	S	G
Template Predicted Secondary structure															.											.										.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.						.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.
Predicted Secondary structure																				.	.	.	.	.																															.	.																	.
Query SS confidence																				.	.	.	.	.																															.	.																	.
Query Sequence		G	L	M	N	M	P	E	F	A	D	I	D	I	V	F	D	A	T	.	.	.	.	.	S	A	G	A	H	V	K	N	D	A	A	L	R	E	A	K	P	D	I	R	L	I	D	L	T	P	A	A	I	G	.	.	P	Y	C	V	P	V	V	N	L	E	A	N	V	D	Q	L	.	N	V	N	M	V	T	C	G
Query Conservation																				.	.	.	.	.																															.	.																	.
Alig confidence										.										.	.	.	.	.																.	.														.	.																	.
Template Conservation										.																														.	.
Template Sequence		K	N	L	P	W	A	K	L	.	G	I	D	V	V	I	E	S	T	G	V	F	S	S	A	T	S	D	K	G	G	Y	L	D	H	V	N	H	A	.	.	G	A	K	K	V	I	L	T	V	P	A	K	D	E	I	K	T	I	V	L	G	V	N	D	H	D	I	N	S	D	L	K	A	V	S	N	A	S	C	T
Template Known Secondary structure		G	G			T	T	T	T	.	T		S						S	S	S			S	S			T	T			G	G	G	G	T	T	T	S	.	.			S					S	S			S	S							T	T	T	S	G	G	G			T	T
Template Predicted Secondary structure										.																														.	.
Template SS confidence
		78	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	A	T	I	P	M	V	A	A	V	S	R	V	A	R	V	H	Y	A	E	I	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	N	C	L	A	P	L	A	K	V	L	H	E	S	F	G	I	E	Q	G	L	M	T	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions