Job Description P77580 Confidence 98.22% Date Thu Jan 5 12:30:45 GMT 2012 Rank 42 Aligned Residues 239 % Identity 19% Template c3docD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: crystal structure of trka glyceraldehyde-3-phosphate2 dehydrogenase from brucella melitensis Resolution 2.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	V	A	I	I	G	S	G	N	I	G	T	D	L	M	I	K	I	L	R	H	G	Q	H	L	E	M	A	V	M	V	G	I	D	P	Q	S	D	G	L	A	R	A	R	R	M	G	V	A	T	T	H	E	G	V	I	G	L	M	N	M	P	E	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.															.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.															.
Template Sequence		V	R	V	A	I	N	G	F	G	R	I	G	R	N	I	L	R	A	I	V	E	.	S	G	R	T	D	I	Q	V	V	A	I	N	D	L	.	G	P	V	E	T	N	A	H	L	L	R	Y	D	S	V	H	G	R	F	P	K	E	V	E	V	A	G	D	T	I	D	V	G	Y	G	P	I	K	V	H	A	V	R
Template Known Secondary structure								S		S													.		T			S									S	.	S													T	T	T		S		S	S						T	T				S	S	S	S								S
Template Predicted Secondary structure																							.															.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
												70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																								.	.																		.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																								.	.																		.
Query Sequence		.	.	.	.	.	.	.	.	.	.	D	I	D	I	V	F	D	A	T	S	A	G	A	H	V	K	N	D	A	A	L	R	E	A	K	P	D	I	R	L	I	D	L	T	P	A	A	I	G	.	.	P	Y	C	V	P	V	V	N	L	E	A	N	V	D	Q	L	N	.	V	N	M	V	T	C	G	G	Q	A	T
Query Conservation		.	.	.	.	.	.	.	.	.	.																																								.	.																		.
Alig confidence		.	.	.	.	.	.	.	.	.	.																									.	.														.	.																		.
Template Conservation																																				.	.
Template Sequence		N	P	A	E	L	P	W	K	E	E	N	V	D	I	A	L	E	C	T	G	I	F	T	S	R	D	K	A	A	L	H	L	E	A	.	.	G	A	K	R	V	I	V	S	A	P	A	D	G	A	D	L	T	V	V	Y	G	V	N	N	D	K	L	T	K	D	H	L	V	I	S	N	A	S	C	T	T	N	C	L
Template Known Secondary structure			G	G	G	S						T		S						S	S	S			S					T						.	.	T		S					S	S			T	T		S		B			T	T	T	S	G	G	G			S	S		S
Template Predicted Secondary structure																																				.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.																						.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	P	M	V	A	A	V	S	R	V	A	R	V	H	Y	A	E	I	I	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	S	K	S	A	G	P	G	T	R	A	N	I	D	E	F	T	E	T	T	S	R	A	I	E	V	V	G	G	A	A	K	G	K	A	I	I
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation																																																						.	.	.	.
Template Sequence		A	P	V	A	Q	V	L	N	D	T	I	G	I	E	K	G	F	M	T	T	I	H	S	Y	T	G	D	Q	P	T	L	D	T	M	H	K	D	L	Y	R	A	R	A	A	A	L	S	M	I	P	T	S	.	.	.	.	T	G	A	A	K	A	V	G	L	V	L	P	E	L	K	G	K	L	D	G	V	A	I	R
Template Known Secondary structure												T															T	T	S		S	S					S	S	T	T	T	T	S		T	T	T	S						.	.	.	.											S	G	G	G	T	T	S
Template Predicted Secondary structure																																																						.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	N	P	A	E	P	P	L	M	M	R	D	T	V	Y	V	L	S	D	E	A	S	Q	D	D	I	E	A	S	I	N	E	M	A	E	A	V	Q	A	Y	V	P	G	Y	R	L	K	Q	R	V	Q	F	E	V	I	P	Q
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence		V	.	.	.	P	T	P	N	V	S	V	V	D	L	T	F	I	A	K	R	E	T	T	V	E	E	V	N	N	A	I	R	E	A	A	N	G	R	L	K	G	I	L	G	Y	T	D	E	K	L	V	S	H	D	F	N	H	D
Template Known Secondary structure			.	.	.	S		S	S											S	S																	T	T	T	T	T	T						S				G	G	G	G	T	T
Template Predicted Secondary structure			.	.	.
Template SS confidence
		235				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions