 |
Job Description | P77580 | Confidence | 97.44% | Date | Thu Jan 5 12:30:45 GMT 2012 |
Rank | 109 | Aligned Residues | 88 |
% Identity | 17% | Template | c3c1aB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:putative oxidoreductase; |
PDBTitle: crystal structure of a putative oxidoreductase (zp_00056571.1) from2 magnetospirillum magnetotacticum ms-1 at 1.85 a resolution
|
Resolution | 1.85 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | |
|
. | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
| . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | K | R | K | V | A | I | I | G | S | G | N | I | G | T | D | L | M | I | K | I | L | R | H | G | Q | H | L | E | M | A | V | M | V | G | I | D | P | Q | S | D | G | L | A | R | A | R | R | M | . |
. |
G | V | A | T | T | H | E | G | V | I | G | L | M | N | M | P | E | F | A | D | I | D | I | V | F | D | A | T | S |
Query Conservation |   |
  |
|   |   |
|
|
|
|
|
|
|   |
|
|
|
|
|
|   |
|
|   |
|   |
|   |   |
|   |   |   |
|   |
|
|
|   |   |   |
|   |
|
|   |
|
|   |   |
| . | . |
|
|   |
|
|   |   |
|
|
|
|   |
|   |   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
| . | . |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|   |
|
|
|   |
|   |   |
|   |   |
|   |   |   |   |   |   | . |   |   |   |   |   |
|
|
|
|   |
|   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |
|
|
|   |   |   | . | . | . |   |   |
|   |
|   |
|   |
|
|
Template Sequence |   |
S | P | V | R | L | A | L | I | G | A | G | R | W | G | K | N | Y | I | R | T | I | A | G | . |
L | P | G | A | A | L | V | R | L | A | S | S | N | P | . |
. |
. |
. |
. |
D | N | L | A | L | V | P | P | G | C | V | I | . |
E | S | D | W | R | S | V | V | S | A | P | . |
. |
. |
E | V | E | A | V | I | I | A | T | P |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |
| T | T | T | T |
| S |  |  |  |  |  |  | T | . |
| T | T |  |  |  |  |  |  |  |  | S |
|  | . | . | . | . | . |  |  |  | T | T |
|
| T | T |
|  |  | . |  | S |
|  |  |  |  |  | T |
| S | . | . | . | S |
|
|  |  |  |  |  | S |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|
|  |  |  |  |  |  |
|
|
|  | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|  | . |  |
|
|  |  |  |  |  |
|
|
| . | . | . |
|
|
|  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | |
. | . | . | . | . | . | . | . | . | 40 | . | . | . | . | |
|
|
|
|
. | . | . | . | . | 50 | . | . | . | . | . | . | |
. | . | . | 60 | . | . | . | . | . | . | . | |
|
|
. | . | 70 | . | . | . | . | . | . | . |
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | G | A | H | V | K | N | D | A | A | L | R | E | A | K | P | D | I | R | L |
Query Conservation |   |
|   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |
|
|   |   |
|
|   |
|   |   |
Template Sequence |   |
P | A | T | H | A | E | I | T | L | A | A | I | A | S | G | K | A | V | L | V |
Template Known Secondary structure |   |
G | G | G |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|