Job Description P77580 Confidence 98.49% Date Thu Jan 5 12:30:45 GMT 2012 Rank 29 Aligned Residues 238 % Identity 19% Template c2i5pO_ PDB info PDB header:oxidoreductase Chain: O: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1; PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase isoform 1 from k. marxianus Resolution 2.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.								.	50	.	.	.	.	.	.	.	.																		.
Predicted Secondary structure																																															.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	V	A	I	I	G	S	G	N	I	G	T	D	L	M	I	K	I	L	R	H	G	Q	H	L	E	M	A	V	M	V	G	I	D	P	Q	S	D	G	L	A	R	A	R	.	.	.	.	.	.	.	R	M	G	V	A	T	T	H	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V
Query Conservation																																															.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																								.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		V	S	I	A	I	N	G	F	G	R	I	G	R	L	V	L	R	I	A	L	E	.	R	K	N	I	D	V	V	A	I	N	D	P	F	I	S	V	D	Y	A	A	Y	M	F	K	Y	D	S	T	H	G	K	Y	K	G	E	V	S	H	D	G	S	N	L	I	I	N	G	K	K	V	A	V	F	Q	E	K	D	P
Template Known Secondary structure										S											T	T	.		T	T									T	T	S													T	T	T				S	S						S	S					T	T									S	S	G
Template Predicted Secondary structure																							.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		I	G	L	M	N	M	P	E	F	A	D	I	D	I	V	F	D	A	T	S	A	G	A	H	V	K	N	D	A	A	L	R	E	A	K	P	D	I	R	L	I	D	L	T	.	P	A	A	I	G	P	Y	C	V	P	V	V	N	L	E	A	N	V	D	Q	L	N	V	N	M	V	T	C	G	G	Q	A	T	I	P
Query Conservation																																														.
Alig confidence										.	.																									.	.									.
Template Conservation										.	.																									.	.
Template Sequence		A	T	L	P	W	G	K	L	.	.	G	V	D	I	A	V	D	S	T	G	V	F	K	E	L	D	S	A	Q	K	H	I	D	A	.	.	G	A	K	K	V	V	I	T	A	P	S	K	T	A	P	M	F	V	V	G	V	N	E	D	K	Y	N	G	E	K	I	V	S	N	A	S	C	T	T	N	C	L	A	P
Template Known Secondary structure		G	G	S		T	T	T	T	.	.	T		S						S	S	S	S		S										T	.	.	T		S					S	S			S	S	S		B			T	T	T	T	G	G	G			S		S
Template Predicted Secondary structure										.	.																									.	.
Template SS confidence
		80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		M	V	A	A	V	S	R	V	A	R	V	H	Y	A	E	I	I	A	S	.	.	I	A	S	K	S	A	G	P	G	T	R	A	N	I	D	E	F	T	E	T	T	S	R	A	I	E	V	V	G	G	A	A	K	G	K	A	I	I	V	L	N	P	A	E	P	P	L	M	M	R	D	T	V	Y	V	L	S	D	E
Query Conservation																					.	.
Alig confidence																					.	.											.	.	.	.																										.	.	.
Template Conservation																																	.	.	.	.																										.	.	.
Template Sequence		I	A	K	I	I	N	D	E	F	G	I	E	E	G	L	M	T	T	V	H	S	I	T	S	G	N	I	I	P	S	S	.	.	.	.	T	G	A	A	K	A	V	G	K	V	L	P	E	L	Q	G	K	L	T	G	M	A	F	R	V	.	.	.	P	T	T	D	V	S	V	V	D	L	T	V	K	L	V	K	A
Template Known Secondary structure										T																							.	.	.	.		S	T	T	T	T					S	G	G	G	T	T	S									.	.	.	S			S											S	S
Template Predicted Secondary structure																																	.	.	.	.																										.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	Q	D	D	I	E	A	S	I	N	E	M	A	E	A	V	Q	A	Y	V	P	G	Y	R	L	K	Q	R	V	Q	F	E	V	I	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	Y	D	E	I	K	A	A	V	K	K	V	S	E	G	K	L	K	D	V	V	G	Y	T	E	D	A	V	V	S	S	D	F	L	G	D
Template Known Secondary structure																	T	T	T	T	T	T						S				G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions