Return to main results Retrieve Phyre Job Id

Job DescriptionP77580
Confidence99.34%DateThu Jan 5 12:30:45 GMT 2012
Rank10Aligned Residues214
% Identity17%Templatec2hjsA_
PDB info PDB header:structural genomics, unknown functionChain: A: PDB Molecule:usg-1 protein homolog; PDBTitle: the structure of a probable aspartate-semialdehyde dehydrogenase from2 pseudomonas aeruginosa
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10 .........20...... ...30.........40.........50.........60.........70.........80
Predicted Secondary structure 
.




.





















Query SS confidence 







.















.





















































Query Sequence  KRKVAIIG. SGNIGTDLMIKILRHG. QHLEMAVMVGIDPQSDGLARARRMGVATTHEGVIGLMNMPEFADIDIVFDATSA
Query Conservation 
  




.

 





 

 
 
.  
   
 


   
 

 

  


 

  



 
   

  









Alig confidence 







.















.











.
















......

















Template Conservation     








 
 





  
  
   
    
  . 

         
    ......         







 
Template Sequence  PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAE. SAGQRXGFAESSLRVGD. . . . . . VDSFDFSSVGLAFFAAAA
Template Known Secondary structure 


TTTSTT


S

TT.TTT
TT
......GGG

GGG
S
S
Template Predicted Secondary structure 













.














......










Template SS confidence 















































































   4.....10.........20.........30.........40. ........50........ .60.........70......
 
   81........90.........100..... ....110.........120.........130.........140... ......150....
Predicted Secondary structure 




...











...




Query SS confidence 
























. . .





































. . .










Query Sequence  GAHVKNDAALREAKPDIRLIDLTPA. . . AIGPYCVPVVNLEANVDQLNVNMVTCGGQATIPMVAAV. . . SRVARVHYAEI
Query Conservation   

  
   
  
  

  





... 

   

 

        














  

...     
 
 

Alig confidence 












..









...





































...










Template Conservation    
          ..
  




 


        
  
      
     





 


  


 

     
  
 
Template Sequence  EVSRAHAERARAA. . GCSVIDLSGALEPSVAPPVXVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNL
Template Known Secondary structure  T..T
TT
TTTTTTS
B

GGGGGGS
SS



TTT

Template Predicted Secondary structure 
..






























Template SS confidence 















































































   77..80......... 90.........100.........110.........120.........130.........140.........150....
 
   155....160.........170.........180. ........190...
Predicted Secondary structure 





.........................................






Query SS confidence 


























. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .











Query Sequence  IASIASKSAGPGTRANIDEFTETTSRA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IEVVGGAAKGKA
Query Conservation 





 
 




 




  

  
.........................................
    

   

Alig confidence 












...










.........................................











Template Conservation      





   ...   
                     
  
  
 
          

     
   

      
Template Sequence  TACLSVSSLGREG. . . VKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPL
Template Known Secondary structure 
GGGG
...TT




SSSSS

TT

BSSSS
B
TTS
BTGGGB

Template Predicted Secondary structure 







...
































Template SS confidence 















































































   155....160....... ..170.........180.........190.........200.........210.........220.........230.
 
   194.....200.........210.... .....220........
Predicted Secondary structure 








.



Query SS confidence 




















.













Query Sequence  IIVLNPAEPPLMMRDTVYVLS. DEASQDDIEASINE
Query Conservation 

 



 
   




    .  

   
   
  
Alig confidence 




















.













Template Conservation    
   


 

   

          
 
      
Template Sequence  NVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDA
Template Known Secondary structure 
S
SS
SS


Template Predicted Secondary structure 











Template SS confidence 



































   232.......240.........250.........260.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions