Job Description P77580 Confidence 98.78% Date Thu Jan 5 12:30:45 GMT 2012 Rank 23 Aligned Residues 242 % Identity 17% Template c2gd1P_ PDB info PDB header:oxidoreductase(aldehyde(d)-nad(a)) Chain: P: PDB Molecule:apo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: coenzyme-induced conformational changes in glyceraldehyde-3-2 phosphate dehydrogenase from bacillus stearothermophillus Resolution 2.50 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	V	A	I	I	G	S	G	N	I	G	T	D	L	M	I	K	I	L	R	H	G	Q	H	L	E	M	A	V	M	V	G	I	D	P	Q	S	D	G	L	A	R	A	R	R	M	G	V	A	T	T	H	E	G	V	I	G	L	M	N	M	P	E	F	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.													.														.	.															.	.		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.													.														.	.															.	.
Template Sequence		V	K	V	G	I	N	G	F	G	R	I	G	R	N	V	F	R	A	A	L	K	.	N	P	D	I	E	V	V	A	V	N	D	L	.	T	D	A	N	T	L	A	H	L	L	K	Y	D	.	.	S	V	H	G	R	L	D	A	E	V	S	V	N	G	.	.	N	N	L	V	V	N	G	K	E	I	I	V	K	A
Template Known Secondary structure										S											T	T	.		T	T									S	.	S													.	.	T	T	T				S	S						T	.	.	T					T	T
Template Predicted Secondary structure																							.													.														.	.															.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.
															71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																		.						.														.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																		.						.														.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	I	V	F	D	A	T	S	A	G	A	H	V	K	N	D	A	A	L	R	E	A	K	P	D	I	R	L	I	D	L	T	.	P	A	A	I	G	.	P	Y	C	V	P	V	V	N	L	E	A	N	V	.	.	D	Q	L	N	V	N	M	V	T	C	G	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																		.						.														.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.									.						.														.	.
Template Conservation																																						.	.
Template Sequence		E	R	D	P	E	N	L	A	W	G	E	I	G	V	D	I	V	V	E	S	T	G	R	F	T	K	R	E	D	A	A	K	H	L	E	A	.	.	G	A	K	K	V	I	I	S	A	P	A	K	N	E	D	I	T	I	V	M	G	V	N	Q	D	K	Y	D	P	K	A	H	H	V	I	S	N	A	S	C	T	T
Template Known Secondary structure			S		G	G	G							T								S	S	S			B					T					T	.	.	T		S					S	S			B	S		S					T	T	T	S	G	G	G			T	T	T
Template Predicted Secondary structure																																						.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.														.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	T	I	P	M	V	A	A	V	S	R	V	A	R	V	H	Y	A	E	I	I	A	S	I	A	S	K	S	A	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	R	A	N	I	D	E	F	T	E	T	T	S	R	A	I	E	V	V	G	G	A	A	K	G	K	A	I	I	V	L	N	P	A
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	C	L	A	P	F	A	K	V	L	H	E	Q	F	G	I	V	R	G	M	M	T	T	V	H	S	Y	T	N	D	Q	R	I	L	D	L	P	H	K	D	L	R	R	A	R	A	A	A	E	S	I	I	P	T	T	T	G	A	A	K	A	V	A	L	V	L	P	E	L	K	G	K	L	N	G	M	A	M	R	V
Template Known Secondary structure																														T	T	S	B	S	S	S				S	S	S	S	T	T	S	B	T	T	T	S							S	T	T	G	G	G	T	T	T	S	G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		E	P	P	L	M	M	R	D	T	V	Y	V	L	S	.	D	E	A	S	Q	D	D	I	E	A	S	I	N	E	M	A	E	A	V	Q	A	Y	V	P	G	Y	R	L	K	Q	R	V	Q	F	E	V	I	P	Q
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		P	T	P	N	V	S	V	V	D	L	V	A	E	L	E	K	E	V	T	V	E	E	V	N	A	A	L	K	A	A	A	E	G	E	L	K	G	I	L	A	Y	S	E	E	P	L	V	S	R	D	Y	N	G	S
Template Known Secondary structure		S		S	S											S	S																	T	T	T	B	T	T						S				G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions