 |
Job Description | P77580 | Confidence | 95.80% | Date | Thu Jan 5 12:30:45 GMT 2012 |
Rank | 161 | Aligned Residues | 100 |
% Identity | 18% | Template | c2bruB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:nad(p) transhydrogenase subunit alpha; |
PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase
|
Resolution | UNK |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 60 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | S | K | R | K | V | A | I | I | G | S | G | N | I | G | T | D | L | M | I | K | I | L | R | H | G | Q | H | L | E | M | A | V | M | V | G | I | D | P | Q | S | D | G | L | A | R | A | R | R | M | G | V | A | T | T | H | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | G | V | I | G | L | M | N | M | P | E | F |
Query Conservation |   |
  |   |
|   |   |
|
|
|
|
|
|
|   |
|
|
|
|
|
|   |
|
|   |
|   |
|   |   |
|   |   |   |
|   |
|
|
|   |   |   |
|   |
|
|   |
|
|   |   |
|
|
|   |
|
|   | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|
|
|   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . |
Template Conservation |   |
|   |   |   |   |
|   |
|
|
|   |
|   |
|
|   |   |
|
|   |   |   |   |   | . | . | . | . |
|
|   |   | . |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   | . | . | . | . |
Template Sequence |   |
V | P | P | A | K | V | M | V | I | G | A | G | V | A | G | L | A | A | I | G | A | A | N | S | . |
. |
. |
. |
L | G | A | I | . |
V | R | A | F | D | T | R | P | E | V | K | E | Q | V | Q | S | M | G | A | E | F | L | E | L | D | M | S | D | A | F | I | K | A | E | M | E | L | F | A | A | Q | A | K | . |
. |
. |
. |
Template Known Secondary structure |   |
|
|
|
|  |  |  |  |  | S | T | T | T |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  | T |
|  | . |  |  |  |  |
| S | S | T |  |  |  |  |  |  |  |  | T | T |
|  |  |
|
|
|
|
|
| T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |
|
|
|  | . |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1163 | . | . | . | . | . | . | 1170 | . | . | . | . | . | . | . | . | . | 1180 | . | . | . | . | . | . | |
|
|
|
. | . | . | 1190 | |
. | . | . | . | . | . | . | . | . | 1200 | . | . | . | . | . | . | . | . | . | 1210 | . | . | . | . | . | . | . | . | . | 1220 | . | . | . | . | . | . | . | . | . | 1230 | . | . | . | |
|
|
|
  |
  |   |
69 | 70 | . | . | . | . | . | . | . | |
|
|
|
. | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
| . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | D | I | D | I | V | F | D | A | . |
. |
. |
. |
T | S | A | G | A | H | V | K | N | D | A | A | L | R | E | A | K | P | D | I | R | L | I | D | L | T | P | A | A | I | G | P | Y |
Query Conservation |   |
  |   |
|
|
|
|
|
|
| . | . | . | . |
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|
|   |   |
|
|
|
|
|
|   |
|
|   |   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |   |
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |
|
|   |
|   |
|
|
|
|
|
|   |
|   |
|
|   |
|
Template Sequence |   |
. |
E | V | D | I | I | V | T | T | A | L | I | P | G | K | P | A | P | K | L | I | T | R | E | M | V | D | S | M | K | A | G | S | V | I | V | D | L | A | A | Q | N | G | G | N | C |
Template Known Secondary structure |   |
. |  |
| S |  |  |  |  |
|
|
| B | T | T | B |
|
|
|
|
| B |
|  |  |  |  | T | T | S |
| S | S |  |  |  |  |  | S | T | T | T | T | T |
| S | B |
Template Predicted Secondary structure |   |
. |  |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
1248 | . | 1250 | . | . | . | . | . | . | . | . | . | 1260 | . | . | . | . | . | . | . | . | . | 1270 | . | . | . | . | . | . | . | . | . | 1280 | . | . | . | . | . | . | . | . | . | 1290 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|