Job Description P77580 Confidence 98.08% Date Thu Jan 5 12:30:45 GMT 2012 Rank 56 Aligned Residues 240 % Identity 16% Template c2b4rQ_ PDB info PDB header:oxidoreductase Chain: Q: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 plasmodium falciparum at 2.25 angstrom resolution reveals intriguing3 extra electron density in the active site Resolution 2.25 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	V	A	I	I	G	S	G	N	I	G	T	D	L	M	I	K	I	L	R	H	G	Q	H	L	E	M	A	V	M	V	G	I	D	P	Q	S	D	G	L	A	R	A	R	R	M	G	V	A	T	T	H	E	G	V	I	G	L	M	N	M	P	E	F	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																				.	.																						.	.		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																				.	.																						.	.
Template Sequence		T	K	L	G	I	N	G	F	G	R	I	G	R	L	V	F	R	A	A	F	G	.	R	K	D	I	E	V	V	A	I	N	D	P	F	M	D	L	N	H	L	.	.	C	Y	L	L	K	Y	D	S	V	H	G	Q	F	P	C	E	V	T	H	A	D	.	.	G	F	L	L	I	G	E	K	K	V	S	V	F	A
Template Known Secondary structure										S													.		S	S									S	S	S						.	.								T	T	T		S		S	S						T	.	.	T					T	T
Template Predicted Secondary structure																							.																				.	.																						.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.
															71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.																		.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.																		.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	I	V	F	D	A	T	S	A	G	A	H	V	K	N	D	A	A	L	R	E	A	K	P	D	I	R	L	I	D	L	T	P	A	A	I	G	.	.	P	Y	C	V	P	V	V	N	L	E	A	N	V	D	Q	L	N	.	V	N	M	V	T	C	G	G	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.																		.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.														.	.																		.
Template Conservation																																						.	.
Template Sequence		E	K	D	P	S	Q	I	P	W	G	K	C	Q	V	D	V	V	C	E	S	T	G	V	F	L	T	K	E	L	A	S	S	H	L	K	G	.	.	G	A	K	K	V	I	M	S	A	P	P	K	D	D	T	P	I	Y	V	M	G	I	N	H	H	Q	Y	D	T	K	Q	L	I	V	S	N	A	S	C	T	T	N
Template Known Secondary structure			S		T	T	S	S		T	T	T	T	T		S						S	S	S			S					T					T	.	.	T		S					S	S			S	S				B			T	T	T	T	G	G	G			T	T
Template Predicted Secondary structure																																						.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.						.	.	.	.	.	.																170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	I	P	M	V	A	A	V	S	R	V	A	R	V	H	Y	A	E	I	I	A	S	I	A	S	K	S	A	.	.	.	.	.	G	P	G	T	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	D	E	F	T	E	T	T	S	R	A	I	E	V	V	G	G	A	A	K	G	K	A	I
Query Conservation																															.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		C	L	A	P	L	A	K	V	I	N	D	R	F	G	I	V	E	G	L	M	T	T	V	H	A	S	T	A	N	Q	L	V	V	D	G	P	S	K	G	G	K	D	W	R	A	G	R	C	A	L	S	N	I	I	P	A	S	T	G	A	A	K	A	V	G	K	V	L	P	E	L	N	G	K	L	T	G	V	A	F
Template Known Secondary structure														T															T	T	S		S	S	S				G	G	G			G	G	G	G	S		T	T	T								S	T	T	T	T					S	G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	L	N	P	A	E	P	P	L	M	M	R	D	T	V	Y	V	L	S	D	E	A	S	Q	D	D	I	E	A	S	I	N	E	M	A	E	A	V	Q	A	Y	V	P	G	Y	R	L	K	Q	R	V	Q	F	E	V	I	P	Q
Query Conservation
Alig confidence				.	.	.
Template Conservation				.	.	.
Template Sequence		R	V	.	.	.	P	I	G	T	V	S	V	V	D	L	V	C	R	L	Q	K	P	A	K	Y	E	E	V	A	L	E	I	K	K	A	A	E	G	P	L	K	G	I	L	G	Y	T	E	D	E	V	V	S	Q	D	F	V	H	D
Template Known Secondary structure				.	.	.	S		S	S											S	S																	T	T	T	B	T	T						S				G	G	G	G	T	T
Template Predicted Secondary structure				.	.	.
Template SS confidence
		237	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions