Job Description P77580 Confidence 98.67% Date Thu Jan 5 12:30:45 GMT 2012 Rank 25 Aligned Residues 174 % Identity 17% Template c1mb4B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:aspartate-semialdehyde dehydrogenase; PDBTitle: crystal structure of aspartate semialdehyde dehydrogenase2 from vibrio cholerae with nadp and s-methyl-l-cysteine3 sulfoxide Resolution 1.84 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure									.																	.	.
Query SS confidence									.																	.	.
Query Sequence		R	K	V	A	I	I	G	.	S	G	N	I	G	T	D	L	M	I	K	I	L	R	H	G	.	.	Q	H	L	E	M	A	V	M	V	G	I	D	P	Q	S	D	G	L	A	R	A	R	R	M	G	V	A	T	T	H	E	G	V	I	G	L	M	N	M	P	E	F	A	D	I	D	I	V	F	D	A	T	S	A
Query Conservation									.																	.	.
Alig confidence									.																	.	.																																							.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.
Template Sequence		M	R	V	G	L	V	G	W	R	G	M	V	G	S	V	L	M	Q	R	M	V	E	E	R	D	F	D	L	I	E	P	V	F	F	S	T	S	Q	I	G	V	P	A	P	N	F	G	K	D	A	G	M	L	H	D	A	F	D	I	E	S	L	K	Q	.	.	.	.	.	.	L	D	A	V	I	T	C	Q	G	G
Template Known Secondary structure								S	T	T	S													T	T	G	G	G	T	S							S	S		T	T	S	B				S	S	S				B				T	T						T	T	.	.	.	.	.	.		S						S
Template Predicted Secondary structure																																																																		.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120						.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																											.	.	.	.																.	.	.	.	.
Query SS confidence																											.	.	.	.																.	.	.	.	.
Query Sequence		G	A	H	V	K	N	D	A	A	L	R	E	A	K	P	D	I	R	L	I	D	L	T	P	A	.	.	.	.	A	I	G	P	Y	C	V	P	V	V	N	L	E	A	N	.	.	.	.	.	V	D	Q	L	N	V	N	M	V	T	C	G	G	Q	A	T	I	P	M	V	A	A	V	S	R	V	A	R	V	H	Y
Query Conservation																											.	.	.	.																.	.	.	.	.
Alig confidence																											.	.	.	.																.	.	.	.	.
Template Conservation
Template Sequence		S	Y	T	E	K	V	Y	P	A	L	R	Q	A	G	W	K	G	Y	W	I	D	A	A	S	T	L	R	M	D	K	E	A	I	I	T	L	D	P	V	N	L	K	Q	I	L	H	G	I	H	H	G	T	K	T	F	V	G	G	N	C	T	V	S	L	M	L	M	A	L	G	G	L	Y	E	R	G	L	V	E	W
Template Known Secondary structure														T	T			S					S	S	S	T	T	T	T		T	T																		T	T	T																								T	T
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	I	I	A	S	I	A	S	K	S	A	G	P	G	T	R	A	N	I	D	E	F	T	E	T	T	S	R	A	I	E	V	V	G
Query Conservation
Alig confidence															.	.	.
Template Conservation															.	.	.
Template Sequence		M	S	A	M	T	Y	Q	A	A	S	G	A	G	.	.	.	A	Q	N	M	R	E	L	I	S	Q	M	G	V	I	N	D	A	V	S
Template Known Secondary structure										G	G	G	G		.	.	.
Template Predicted Secondary structure															.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions