Job Description P77580 Confidence 93.40% Date Thu Jan 5 12:30:45 GMT 2012 Rank 217 Aligned Residues 247 % Identity 18% Template c1i32D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	R	K	V	A	I	I	G	S	G	N	I	G	T	D	L	M	I	K	I	L	R	H	.	.	.	G	Q	H	L	E	M	A	V	M	V	G	I	D	P	Q	S	D	G	L	A	R	A	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	I	K	V	G	I	N	G	F	G	R	I	G	R	M	V	F	Q	A	I	C	D	Q	G	L	I	G	T	E	I	D	V	V	A	V	V	D	M	S	T	N	A	E	Y	F	A	Y	Q	M	K	H	D	T	V	H	G	R	P	K	Y	T	V	E	A	V	K	S	S	P	S	V	E	T	A	D	V	L	V	V
Template Known Secondary structure												S													T	T		B	T	T	T									S															T	T	T		S		S	S							S	S	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
									50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120
Predicted Secondary structure		.	.	.	.	.	.	.																																																																							.	.
Query SS confidence		.	.	.	.	.	.	.																																																																							.	.
Query Sequence		.	.	.	.	.	.	.	M	G	V	A	T	T	H	E	G	V	I	G	L	M	N	M	P	E	F	A	D	I	D	I	V	F	D	A	T	S	A	G	A	H	V	K	N	D	A	A	L	R	E	A	K	P	D	I	R	L	I	D	L	T	P	A	A	I	G	P	Y	C	V	P	V	V	N	L	E	A	.	.	N
Query Conservation		.	.	.	.	.	.	.																																																																							.	.
Alig confidence		.	.	.	.	.	.	.																.	.	.	.	.																																																			.	.
Template Conservation																								.	.	.	.	.
Template Sequence		N	G	H	R	I	K	C	V	K	A	Q	R	N	P	A	D	L	P	W	G	K	L	.	.	.	.	.	G	V	D	Y	V	I	E	S	T	G	L	F	T	D	K	L	K	A	E	G	H	I	K	G	G	A	K	K	V	V	I	S	A	P	A	S	G	G	A	K	T	I	V	M	G	V	N	Q	H	E	Y	S	P
Template Known Secondary structure		T	T										S	S	G	G	G	S						.	.	.	.	.	T								S	S	S			B					T					T	T		S					S	S			B	S	S						T	T	T	S	G	G	G			T
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.												.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																									.											.	.	.											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.											.	.	.											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	D	Q	L	N	V	N	M	V	T	C	G	G	Q	A	T	I	P	M	V	A	A	V	.	S	R	V	A	R	V	H	Y	A	E	.	.	.	I	I	A	S	I	A	S	K	S	A	.	.	.	.	.	.	.	.	.	.	.	G	P	G	T	R	A	N	I	D	E	F	T	E	T	T	S	R	A	I	E	V	V
Query Conservation																									.											.	.	.											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.											.	.	.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	H	H	V	V	S	N	A	S	C	T	T	N	C	L	A	P	I	V	H	V	L	T	K	E	N	F	G	I	E	T	G	L	M	T	T	I	H	S	Y	T	A	T	Q	K	T	V	D	G	V	S	L	K	D	W	R	G	G	R	A	A	A	V	N	I	I	P	S	T	T	G	A	A	K	A	V	G	M	V
Template Known Secondary structure		T	T		S																						T	T				S												T	T	S	B	S	S	S				S	S		T	G	G	G	S	B	G	G	G								S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		186	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		G	G	A	A	K	G	K	A	I	.	I	V	L	N	P	A	E	P	P	L	M	M	R	D	T	V	Y	V	L	S	D	E	A	S	Q	D	D	I	E	A	S	I	N	E	M	A	E	A	V	Q	A	Y	V	P	G	Y	R	L	K	Q	R	V	Q	F	E	V	I	P	Q
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		I	P	S	T	K	G	K	L	T	G	M	S	F	R	V	P	T	P	D	V	S	V	V	D	L	T	F	R	A	T	R	D	T	S	I	Q	E	I	D	K	A	I	K	K	A	A	Q	T	Y	M	K	G	I	L	G	F	T	D	E	E	L	V	S	A	D	F	I	N	D
Template Known Secondary structure		S	G	G	G	T	T	T									S		S	S											S	S																	T	T	T	T	T	T						S				G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions