Job Description P77580 Confidence 98.28% Date Thu Jan 5 12:30:45 GMT 2012 Rank 39 Aligned Residues 245 % Identity 20% Template c1hdgO_ PDB info PDB header:oxidoreductase (aldehy(d)-nad(a)) Chain: O: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: the crystal structure of holo-glyceraldehyde-3-phosphate dehydrogenase2 from the hyperthermophilic bacterium thermotoga maritima at 2.53 angstroms resolution Resolution 2.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	A	I	I	G	S	G	N	I	G	T	D	L	M	I	K	I	L	R	H	G	Q	H	L	E	M	A	V	M	V	G	I	D	P	Q	S	D	G	L	A	R	A	R	R	M	G	V	A	T	T	H	E	G	V	I	G	L	M	N	M	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.								.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.								.
Template Sequence		R	V	A	I	N	G	F	G	R	I	G	R	L	V	Y	R	I	I	Y	E	.	R	K	N	P	D	I	E	.	V	V	A	I	N	D	L	T	D	T	K	T	L	A	H	L	L	K	Y	D	S	V	H	K	K	F	P	G	K	V	E	Y	T	E	N	S	L	I	V	D	G	K	E	I	K	V	F	A	E	P	D
Template Known Secondary structure									S													.		T		T	T			.							S	S													T	T	T				S	S						S	S					T	T									S	S
Template Predicted Secondary structure																						.								.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
									68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																										.	.																		.
Query SS confidence		.	.	.	.	.	.	.																																										.	.																		.
Query Sequence		.	.	.	.	.	.	.	F	A	D	I	D	I	V	F	D	A	T	S	A	G	A	H	V	K	N	D	A	A	L	R	E	A	K	P	D	I	R	L	I	D	L	T	P	A	A	I	G	.	.	P	Y	C	V	P	V	V	N	L	E	A	N	V	D	Q	L	N	.	V	N	M	V	T	C	G	G	Q	A	T	I
Query Conservation		.	.	.	.	.	.	.																																										.	.																		.
Alig confidence		.	.	.	.	.	.	.																											.	.														.	.																		.
Template Conservation																																			.	.
Template Sequence		P	S	K	L	P	W	K	D	L	G	V	D	F	V	I	E	S	T	G	V	F	R	N	R	E	K	A	E	L	H	L	Q	A	.	.	G	A	K	K	V	I	I	T	A	P	A	K	G	E	D	I	T	V	V	I	G	C	N	E	D	Q	L	K	P	E	H	T	I	I	S	C	A	S	C	T	T	N	S	I	A
Template Known Secondary structure		G	G	G	S						T								S	S	S			B					T					T	.	.	T		S					S	S			B	S		S					T	T	T	T	G	G	G			T	T
Template Predicted Secondary structure																																			.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.														.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	M	V	A	A	V	S	R	V	A	R	V	H	Y	A	E	I	I	A	S	I	A	S	K	S	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	T	R	A	N	I	D	E	F	T	E	T	T	S	R	A	I	E	V	V	G	G	A	A	K	G	K	A	I	I	V	L	N	P	A	E	P	P	L
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	I	V	K	V	L	H	E	K	F	G	I	V	S	G	M	L	T	T	V	H	S	Y	T	N	D	Q	R	V	L	D	L	P	H	K	D	L	R	R	A	R	A	A	A	V	N	I	I	P	T	T	T	G	A	A	K	A	V	A	L	V	V	P	E	V	K	G	K	L	D	G	M	A	I	R	V	P	T	P	D
Template Known Secondary structure																										T	T	S	B	S	S	S				S	S	T	T	T	T	S	B	G	G	G								T										G	G	G	T	T	T									S		S	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		M	M	R	D	T	V	Y	V	L	S	.	D	E	A	S	Q	D	D	I	E	A	S	I	N	E	M	A	E	A	V	Q	A	Y	V	P	G	Y	R	L	K	Q	R	V	Q	F	E	V	I	P	Q
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		G	S	I	T	D	L	T	V	L	V	E	K	E	T	T	V	E	E	V	N	A	V	M	K	E	A	T	E	G	R	L	K	G	I	I	G	Y	N	D	E	P	I	V	S	S	D	I	I	G	T
Template Known Secondary structure												S	S																T	T	T	T	T	T	T						S				G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions