Secondary structure and disorder prediction |   |
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1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
Sequence |   |
M | H | S | Q | I | W | V | V | S | T | L | L | I | S | I | V | L | I | V | L | T | I | V | K | F | K | F | H | P | F | L | A | L | L | L | A | S | F | F | V | G | T | M | M | G | M | G | P | L | D | M | V | N | A | I | E | S | G | I | G |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
Sequence |   |
G | T | L | G | F | L | A | A | V | I | G | L | G | T | I | L | G | K | M | M | E | V | S | G | A | A | E | R | I | G | L | T | L | Q | R | C | R | W | L | S | V | D | V | I | M | V | L | V | G | L | I | C | G | I | T | L | F | V | E | V |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 |
Sequence |   |
G | V | V | L | L | I | P | L | A | F | S | I | A | K | K | T | N | T | S | L | L | K | L | A | I | P | L | C | T | A | L | M | A | V | H | C | V | V | P | P | H | P | A | A | L | Y | V | A | N | K | L | G | A | D | I | G | S | V | I | V |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
Sequence |   |
Y | G | L | L | V | G | L | M | A | S | L | I | G | G | P | L | F | L | K | F | L | G | Q | R | L | P | F | K | P | V | P | T | E | F | A | D | L | K | V | R | D | E | K | T | L | P | S | L | G | A | T | L | F | T | I | L | L | P | I | A |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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| ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 |
Sequence |   |
L | M | L | V | K | T | I | A | E | L | N | M | A | R | E | S | G | L | Y | I | L | V | E | F | I | G | N | P | I | T | A | M | F | I | A | V | F | V | A | Y | Y | V | L | G | I | R | Q | H | M | S | M | G | T | M | L | T | H | T | E | N |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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. | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 |
Sequence |   |
G | F | G | S | I | A | N | I | L | L | I | I | G | A | G | G | A | F | N | A | I | L | K | S | S | S | L | A | D | T | L | A | V | I | L | S | N | M | H | M | H | P | I | L | L | A | W | L | V | A | L | I | L | H | A | A | V | G | S | A |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |   |
. | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 |
Sequence |   |
T | V | A | M | M | G | A | T | A | I | V | A | P | M | L | P | L | Y | P | D | I | S | P | E | I | I | A | I | A | I | G | S | G | A | I | G | C | T | I | V | T | D | S | L | F | W | L | V | K | Q | Y | C | G | A | T | L | N | E | T | F |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |
  |   |
. | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . |
Sequence |   |
K | Y | Y | T | T | A | T | F | I | A | S | V | V | A | L | A | G | T | F | L | L | S | F | I | I |
Secondary structure |   |
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SS confidence |   |
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Disorder |   |
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Disorder confidence |   |
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  |
Confidence Key |
High(9) |   |
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Low (0) |
? | Disordered |
  | Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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1 |
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PDB 2w8a chain C
Region: 32 - 229 Aligned: 186 Modelled: 197 Confidence: 13.1% Identity: 11% PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
Phyre2
2 |
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PDB 2a65 chain A domain 1
Region: 85 - 293 Aligned: 190 Modelled: 209 Confidence: 8.4% Identity: 7% Fold: SNF-like Superfamily: SNF-like Family: SNF-like
Phyre2
3 |
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PDB 3qnq chain D
Region: 23 - 216 Aligned: 194 Modelled: 194 Confidence: 8.2% Identity: 14% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
Phyre2
4 |
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PDB 2knc chain A
Region: 171 - 222 Aligned: 52 Modelled: 52 Confidence: 7.9% Identity: 15% PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
Phyre2
5 |
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PDB 2vof chain A
Region: 62 - 100 Aligned: 39 Modelled: 38 Confidence: 6.3% Identity: 13% PDB header:apoptosis Chain: A: PDB Molecule:bcl-2-related protein a1;
PDBTitle: structure of mouse a1 bound to the puma bh3-domain
Phyre2
|
Detailed template information |   |
Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
If you use the binding site
predictions from 3DLigandSite, please also cite: |
3DLigandSite: predicting ligand-binding sites using similar structures. |
Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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