Job Description P08555 Confidence 1.57% Date Thu Jan 5 11:01:32 GMT 2012 Rank 45 Aligned Residues 268 % Identity 14% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	G	F	L	A	A	V	I	G	L	G	T	I	L	G	K	M	M	E	V	S	G	A	A	E	R	I	G	L	T	L	Q	R	C	R	W	L	S	V	D	V	I	M	V	L	V	G	L	I	C	G	I	T	L	F	V	E	V	G	V	V	L	L	I	P	L	A	F	S	I	A	K	K	T	N	T	S	L	L
Query Conservation
Alig confidence																											.																																														.	.	.
Template Conservation																											.																																														.	.	.
Template Sequence		E	W	M	S	A	I	T	L	I	I	V	G	K	Y	F	L	P	I	F	I	E	K	G	I	Y	.	T	I	P	E	F	V	E	K	R	F	N	K	K	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	.	.	.	L	G	I	P	L	M
Template Known Secondary structure																T							T	T			.	S									T																			T																	.	.	.	T	T
Template Predicted Secondary structure																											.																																														.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	A	I	P	L	C	T	A	L	M	A	V	H	C	V	V	P	P	H	P	A	A	L	Y	V	A	N	K	L	G	A	D	I	G	S	V	I	V	Y	G	L	L	V	G	L	M	A	S	L	I	G	G	P	L	F	L	K	F	L	G	Q	R	L	P	F	K	P	V	P	T	E	F	A	D	L	K	V	R	D
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	W	T	D	V	I	Q	V	F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F
Template Known Secondary structure														T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S																										T	T	S														G	G	G	G
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.																		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	T	L	P	S	L	G	A	T	L	F	T	I	L	L	P	I	A	L	M	L	V	K	T	I	A	E	L	N	M	A	R	E	S	G	L	Y	I	L	V	E	F	I	G	N	P	I	T	A	M	F	I	A	V	F	V	A	Y	Y	V	L	G	I	R	Q	H	M	S	M	G	T	M	L	T	H	T	E	N	G
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q	Y	I	I	Q	R	T	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	S	V	S	E	A	Q	K	G	I	V	F	A
Template Known Secondary structure			S	S			S	S	S	S	G	G	G	G	S		T	T					S	T									T	T	T	T									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.																							.	.	.	280	.	.	.	.	.	.	.	.	.	290
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.																		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	S	I	A	N	I	L	L	I	I	G	A	G	G	A	F	N	A	I	L	K	S	S	S	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	L	A	V	I	L	S	N	M	H	M	H	P	I	L	L	A	W	L	V	A	L	I	L	H	A	A	V	G	S	A	T	V	A	M
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G	V	V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	M	L
Template Known Secondary structure								G	G	G	T	T																						T	T			S					S	S	S	G	G	G							T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		365	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	A	T	A	I	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	T	A	T	I	F	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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